Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm44367-201ENSMUST00000196836 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44350-201ENSMUST00000197197 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44390-201ENSMUST00000197533 144 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44313-201ENSMUST00000198018 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44486-201ENSMUST00000198508 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44314-201ENSMUST00000199263 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44394-201ENSMUST00000199558 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44484-201ENSMUST00000199873 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44466-201ENSMUST00000200264 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Gm44359-201ENSMUST00000200671 138 ntBASIC16■□□□□ 0.15
Six4Q61321 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16■□□□□ 0.15
Six4Q61321 AC117588.1-201ENSMUST00000228510 999 ntBASIC16■□□□□ 0.15
Six4Q61321 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
Six4Q61321 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16■□□□□ 0.15
Six4Q61321 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Six4Q61321 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Six4Q61321 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
Six4Q61321 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.99■□□□□ 0.15
Six4Q61321 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC15.99■□□□□ 0.15
Six4Q61321 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
Six4Q61321 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Six4Q61321 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Six4Q61321 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Six4Q61321 Prob1-201ENSMUST00000097619 3021 ntBASIC15.98■□□□□ 0.15
Six4Q61321 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.98■□□□□ 0.15
Six4Q61321 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
Six4Q61321 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Six4Q61321 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Six4Q61321 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.97■□□□□ 0.15
Six4Q61321 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
Six4Q61321 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Gm7153-201ENSMUST00000117092 455 ntBASIC15.97■□□□□ 0.15
Six4Q61321 Gm8097-201ENSMUST00000117903 829 ntBASIC15.97■□□□□ 0.15
Six4Q61321 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Gm13830-205ENSMUST00000201195 1155 ntBASIC15.97■□□□□ 0.15
Six4Q61321 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
Six4Q61321 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC15.97■□□□□ 0.15
Six4Q61321 Gm18622-201ENSMUST00000219361 595 ntBASIC15.97■□□□□ 0.15
Six4Q61321 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.97■□□□□ 0.15
Six4Q61321 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Six4Q61321 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Six4Q61321 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.96■□□□□ 0.15
Six4Q61321 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Six4Q61321 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Six4Q61321 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Six4Q61321 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.96■□□□□ 0.15
Six4Q61321 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Six4Q61321 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.96■□□□□ 0.15
Six4Q61321 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC15.96■□□□□ 0.15
Six4Q61321 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms