Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.48■□□□□ 0.39
CtcfQ61164 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 Gm29707-201ENSMUST00000196325 491 ntBASIC17.48■□□□□ 0.39
CtcfQ61164 Gm45058-201ENSMUST00000205810 766 ntBASIC17.48■□□□□ 0.39
CtcfQ61164 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CtcfQ61164 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
CtcfQ61164 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.48■□□□□ 0.39
CtcfQ61164 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CtcfQ61164 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.47■□□□□ 0.39
CtcfQ61164 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CtcfQ61164 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.46■□□□□ 0.39
CtcfQ61164 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.46■□□□□ 0.39
CtcfQ61164 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.46■□□□□ 0.39
CtcfQ61164 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.46■□□□□ 0.39
CtcfQ61164 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CtcfQ61164 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CtcfQ61164 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Mir1668-201ENSMUST00000184114 107 ntBASIC17.46■□□□□ 0.39
CtcfQ61164 Gm37722-201ENSMUST00000193757 208 ntBASIC17.46■□□□□ 0.39
CtcfQ61164 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CtcfQ61164 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.46■□□□□ 0.39
CtcfQ61164 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CtcfQ61164 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CtcfQ61164 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CtcfQ61164 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CtcfQ61164 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.38
CtcfQ61164 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CtcfQ61164 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CtcfQ61164 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.45■□□□□ 0.38
CtcfQ61164 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CtcfQ61164 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CtcfQ61164 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CtcfQ61164 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CtcfQ61164 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CtcfQ61164 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.44■□□□□ 0.38
CtcfQ61164 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CtcfQ61164 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CtcfQ61164 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms