Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC12.85□□□□□ -0.35
Cdx1P18111 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Cdx1P18111 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Cdx1P18111 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC12.85□□□□□ -0.35
Cdx1P18111 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.84□□□□□ -0.35
Cdx1P18111 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC12.84□□□□□ -0.35
Cdx1P18111 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cdx1P18111 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC12.84□□□□□ -0.35
Cdx1P18111 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC12.84□□□□□ -0.35
Cdx1P18111 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Cdx1P18111 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx1P18111 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC12.84□□□□□ -0.35
Cdx1P18111 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC12.83□□□□□ -0.35
Cdx1P18111 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Cdx1P18111 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cdx1P18111 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cdx1P18111 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cdx1P18111 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cdx1P18111 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC12.83□□□□□ -0.36
Cdx1P18111 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC12.83□□□□□ -0.36
Cdx1P18111 Mir8112-201ENSMUST00000184382 131 ntBASIC12.83□□□□□ -0.36
Cdx1P18111 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC12.83□□□□□ -0.36
Cdx1P18111 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Otx2os1-204ENSMUST00000227221 751 ntBASIC12.83□□□□□ -0.36
Cdx1P18111 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cdx1P18111 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cdx1P18111 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx1P18111 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Gm7889-201ENSMUST00000185591 958 ntBASIC12.82□□□□□ -0.36
Cdx1P18111 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 AC159205.6-201ENSMUST00000224935 887 ntBASIC12.82□□□□□ -0.36
Cdx1P18111 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Wnt10b-204ENSMUST00000226655 1807 ntBASIC12.82□□□□□ -0.36
Cdx1P18111 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms