Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Chmp6P0C0A3 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Chmp6P0C0A3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Gm28033-201ENSMUST00000184224 96 ntBASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.25■□□□□ 0.35
Chmp6P0C0A3 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chmp6P0C0A3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chmp6P0C0A3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms