Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 AC108846.1-201ENSMUST00000214531 513 ntBASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps53Q8CCB4 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Vps53Q8CCB4 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Gm7935-201ENSMUST00000100555 1278 ntBASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.45■□□□□ 0.54
Vps53Q8CCB4 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps53Q8CCB4 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps53Q8CCB4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Gm36967-201ENSMUST00000193814 266 ntBASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms