Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Ptchd3Q0EEE2 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ptchd3Q0EEE2 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ptchd3Q0EEE2 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ptchd3Q0EEE2 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ptchd3Q0EEE2 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gm7889-201ENSMUST00000185591 958 ntBASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ptchd3Q0EEE2 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ptchd3Q0EEE2 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ptchd3Q0EEE2 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ptchd3Q0EEE2 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ptchd3Q0EEE2 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ptchd3Q0EEE2 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms