Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Rfx1P48377 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.03■□□□□ 0.64
Rfx1P48377 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.03■□□□□ 0.64
Rfx1P48377 Mir5122-201ENSMUST00000175004 89 ntBASIC19.03■□□□□ 0.64
Rfx1P48377 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.03■□□□□ 0.64
Rfx1P48377 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Rfx1P48377 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC19.03■□□□□ 0.64
Rfx1P48377 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.02■□□□□ 0.64
Rfx1P48377 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.02■□□□□ 0.64
Rfx1P48377 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.02■□□□□ 0.64
Rfx1P48377 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.02■□□□□ 0.64
Rfx1P48377 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Rfx1P48377 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfx1P48377 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Rfx1P48377 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.02■□□□□ 0.64
Rfx1P48377 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Rfx1P48377 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.01■□□□□ 0.63
Rfx1P48377 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.01■□□□□ 0.63
Rfx1P48377 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.01■□□□□ 0.63
Rfx1P48377 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Rfx1P48377 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.01■□□□□ 0.63
Rfx1P48377 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.01■□□□□ 0.63
Rfx1P48377 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.01■□□□□ 0.63
Rfx1P48377 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC19.01■□□□□ 0.63
Rfx1P48377 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfx1P48377 Spsb2-203ENSMUST00000112473 1322 ntBASIC19■□□□□ 0.63
Rfx1P48377 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19■□□□□ 0.63
Rfx1P48377 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
Rfx1P48377 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC19■□□□□ 0.63
Rfx1P48377 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rfx1P48377 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Rfx1P48377 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Rfx1P48377 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfx1P48377 Gm32996-201ENSMUST00000199828 1447 ntBASIC19■□□□□ 0.63
Rfx1P48377 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Rfx1P48377 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms