Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col5a1O88207 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Col5a1O88207 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.24□□□□□ -0.13
Col5a1O88207 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col5a1O88207 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col5a1O88207 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Gm18489-201ENSMUST00000172565 551 ntBASIC14.24□□□□□ -0.13
Col5a1O88207 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.24□□□□□ -0.13
Col5a1O88207 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col5a1O88207 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.24□□□□□ -0.13
Col5a1O88207 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col5a1O88207 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col5a1O88207 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.23□□□□□ -0.13
Col5a1O88207 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Col5a1O88207 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Gm14127-201ENSMUST00000117906 678 ntBASIC14.23□□□□□ -0.13
Col5a1O88207 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Col5a1O88207 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Col5a1O88207 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Col5a1O88207 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col5a1O88207 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.22□□□□□ -0.13
Col5a1O88207 Gm12892-201ENSMUST00000117367 1146 ntBASIC14.22□□□□□ -0.13
Col5a1O88207 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.22□□□□□ -0.13
Col5a1O88207 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.22□□□□□ -0.13
Col5a1O88207 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.22□□□□□ -0.13
Col5a1O88207 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.22□□□□□ -0.13
Col5a1O88207 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.22□□□□□ -0.13
Col5a1O88207 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col5a1O88207 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.22□□□□□ -0.13
Col5a1O88207 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Col5a1O88207 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col5a1O88207 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.21□□□□□ -0.13
Col5a1O88207 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Col5a1O88207 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC14.21□□□□□ -0.13
Col5a1O88207 Gm5177-201ENSMUST00000183092 997 ntBASIC14.21□□□□□ -0.13
Col5a1O88207 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC14.21□□□□□ -0.13
Col5a1O88207 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col5a1O88207 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Col5a1O88207 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col5a1O88207 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col5a1O88207 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms