Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Scn11aQ9R053 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
Scn11aQ9R053 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Scn11aQ9R053 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Scn11aQ9R053 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
Scn11aQ9R053 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Scn11aQ9R053 Gm9812-201ENSMUST00000061934 968 ntBASIC28.12■■■□□ 2.09
Scn11aQ9R053 Gm37847-201ENSMUST00000192163 1497 ntBASIC28.12■■■□□ 2.09
Scn11aQ9R053 Gm31748-201ENSMUST00000194938 1497 ntBASIC28.12■■■□□ 2.09
Scn11aQ9R053 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Scn11aQ9R053 Gm9910-201ENSMUST00000195385 1550 ntBASIC28.11■■■□□ 2.09
Scn11aQ9R053 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Scn11aQ9R053 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Scn11aQ9R053 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Scn11aQ9R053 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
Scn11aQ9R053 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Scn11aQ9R053 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Scn11aQ9R053 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
Scn11aQ9R053 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Scn11aQ9R053 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Scn11aQ9R053 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
Scn11aQ9R053 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Scn11aQ9R053 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Scn11aQ9R053 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Scn11aQ9R053 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Scn11aQ9R053 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
Scn11aQ9R053 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Scn11aQ9R053 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.03■■■□□ 2.08
Scn11aQ9R053 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Scn11aQ9R053 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Scn11aQ9R053 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
Scn11aQ9R053 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
Scn11aQ9R053 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Scn11aQ9R053 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Scn11aQ9R053 AC153911.1-201ENSMUST00000220378 758 ntBASIC28.01■■■□□ 2.07
Scn11aQ9R053 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Scn11aQ9R053 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Scn11aQ9R053 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Scn11aQ9R053 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Scn11aQ9R053 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Scn11aQ9R053 Gm7332-201ENSMUST00000118351 454 ntBASIC27.99■■■□□ 2.07
Scn11aQ9R053 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
Scn11aQ9R053 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC27.98■■■□□ 2.07
Scn11aQ9R053 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC27.98■■■□□ 2.07
Scn11aQ9R053 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Scn11aQ9R053 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
Scn11aQ9R053 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC27.96■■■□□ 2.07
Scn11aQ9R053 Terc-201ENSMUST00000082862 423 ntBASIC27.96■■■□□ 2.07
Scn11aQ9R053 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC27.95■■■□□ 2.06
Scn11aQ9R053 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Scn11aQ9R053 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Scn11aQ9R053 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
Scn11aQ9R053 Gm4419-202ENSMUST00000226239 1431 ntBASIC27.94■■■□□ 2.06
Scn11aQ9R053 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC27.94■■■□□ 2.06
Scn11aQ9R053 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Scn11aQ9R053 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC27.94■■■□□ 2.06
Scn11aQ9R053 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
Scn11aQ9R053 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Scn11aQ9R053 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC27.94■■■□□ 2.06
Scn11aQ9R053 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Scn11aQ9R053 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.93■■■□□ 2.06
Scn11aQ9R053 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC27.93■■■□□ 2.06
Scn11aQ9R053 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Scn11aQ9R053 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Scn11aQ9R053 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Scn11aQ9R053 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Scn11aQ9R053 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
Scn11aQ9R053 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
Scn11aQ9R053 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Scn11aQ9R053 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC27.91■■■□□ 2.06
Scn11aQ9R053 Gm5812-201ENSMUST00000061073 957 ntBASIC27.91■■■□□ 2.06
Scn11aQ9R053 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC27.91■■■□□ 2.06
Scn11aQ9R053 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Scn11aQ9R053 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC27.89■■■□□ 2.06
Scn11aQ9R053 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC27.89■■■□□ 2.06
Scn11aQ9R053 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Scn11aQ9R053 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
Scn11aQ9R053 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Scn11aQ9R053 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Scn11aQ9R053 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Scn11aQ9R053 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Scn11aQ9R053 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Scn11aQ9R053 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Scn11aQ9R053 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Scn11aQ9R053 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Scn11aQ9R053 Gm14523-201ENSMUST00000117260 558 ntBASIC27.86■■■□□ 2.05
Scn11aQ9R053 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC27.86■■■□□ 2.05
Scn11aQ9R053 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Scn11aQ9R053 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC27.86■■■□□ 2.05
Scn11aQ9R053 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Scn11aQ9R053 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Scn11aQ9R053 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC27.86■■■□□ 2.05
Scn11aQ9R053 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
Scn11aQ9R053 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC27.85■■■□□ 2.05
Scn11aQ9R053 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Scn11aQ9R053 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Scn11aQ9R053 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Scn11aQ9R053 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Scn11aQ9R053 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
Scn11aQ9R053 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
Retrieved 100 of 76,532 protein–RNA pairs in 9.2 ms