Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp2bQ8BJF9 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp2bQ8BJF9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp2bQ8BJF9 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp2bQ8BJF9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp2bQ8BJF9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Chmp2bQ8BJF9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp2bQ8BJF9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp2bQ8BJF9 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.34■■□□□ 1.33
Chmp2bQ8BJF9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp2bQ8BJF9 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp2bQ8BJF9 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Chmp2bQ8BJF9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Chmp2bQ8BJF9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC23.33■■□□□ 1.33
Chmp2bQ8BJF9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Chmp2bQ8BJF9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Chmp2bQ8BJF9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Chmp2bQ8BJF9 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.32■■□□□ 1.32
Chmp2bQ8BJF9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp2bQ8BJF9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp2bQ8BJF9 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp2bQ8BJF9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Chmp2bQ8BJF9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Chmp2bQ8BJF9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
Chmp2bQ8BJF9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Chmp2bQ8BJF9 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Chmp2bQ8BJF9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Chmp2bQ8BJF9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Chmp2bQ8BJF9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Chmp2bQ8BJF9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Chmp2bQ8BJF9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Chmp2bQ8BJF9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC23.27■■□□□ 1.32
Chmp2bQ8BJF9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Chmp2bQ8BJF9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp2bQ8BJF9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp2bQ8BJF9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
Chmp2bQ8BJF9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Nkain2-201ENSMUST00000092602 558 ntBASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp2bQ8BJF9 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp2bQ8BJF9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp2bQ8BJF9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp2bQ8BJF9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Gm42699-201ENSMUST00000198104 1657 ntBASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp2bQ8BJF9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp2bQ8BJF9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC23.2■■□□□ 1.3
Chmp2bQ8BJF9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chmp2bQ8BJF9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chmp2bQ8BJF9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chmp2bQ8BJF9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.18■■□□□ 1.3
Chmp2bQ8BJF9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chmp2bQ8BJF9 Gm42809-201ENSMUST00000198429 1138 ntBASIC23.17■■□□□ 1.3
Chmp2bQ8BJF9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 444.4 ms