Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Hmgb4Q6P8W9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Hmgb4Q6P8W9 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Hmgb4Q6P8W9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Hmgb4Q6P8W9 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Gm12366-201ENSMUST00000121722 873 ntBASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Gm5786-201ENSMUST00000085368 882 ntBASIC23.98■■□□□ 1.43
Hmgb4Q6P8W9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Hmgb4Q6P8W9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Hmgb4Q6P8W9 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.97■■□□□ 1.43
Hmgb4Q6P8W9 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Hmgb4Q6P8W9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Hmgb4Q6P8W9 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Hmgb4Q6P8W9 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Hmgb4Q6P8W9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Hmgb4Q6P8W9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Hmgb4Q6P8W9 Gm27502-201ENSMUST00000183495 199 ntBASIC23.94■■□□□ 1.42
Hmgb4Q6P8W9 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Hmgb4Q6P8W9 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Hmgb4Q6P8W9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Hmgb4Q6P8W9 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Hmgb4Q6P8W9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Hmgb4Q6P8W9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
Hmgb4Q6P8W9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Hmgb4Q6P8W9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Hmgb4Q6P8W9 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Hmgb4Q6P8W9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.87■■□□□ 1.41
Hmgb4Q6P8W9 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Hmgb4Q6P8W9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Hmgb4Q6P8W9 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Hmgb4Q6P8W9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.85■■□□□ 1.41
Hmgb4Q6P8W9 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Hmgb4Q6P8W9 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Hmgb4Q6P8W9 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Hmgb4Q6P8W9 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Hmgb4Q6P8W9 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Hmgb4Q6P8W9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Hmgb4Q6P8W9 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC23.82■■□□□ 1.4
Hmgb4Q6P8W9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Hmgb4Q6P8W9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Hmgb4Q6P8W9 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC23.81■■□□□ 1.4
Hmgb4Q6P8W9 Gm9910-201ENSMUST00000195385 1550 ntBASIC23.81■■□□□ 1.4
Hmgb4Q6P8W9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.8■■□□□ 1.4
Hmgb4Q6P8W9 Gm7332-201ENSMUST00000118351 454 ntBASIC23.8■■□□□ 1.4
Hmgb4Q6P8W9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Hmgb4Q6P8W9 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Hmgb4Q6P8W9 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Hmgb4Q6P8W9 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Hmgb4Q6P8W9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Hmgb4Q6P8W9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Hmgb4Q6P8W9 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Hmgb4Q6P8W9 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Hmgb4Q6P8W9 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Hmgb4Q6P8W9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Hmgb4Q6P8W9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
Hmgb4Q6P8W9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Hmgb4Q6P8W9 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Hmgb4Q6P8W9 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Hmgb4Q6P8W9 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Hmgb4Q6P8W9 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
Hmgb4Q6P8W9 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.75■■□□□ 1.39
Hmgb4Q6P8W9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Hmgb4Q6P8W9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms