Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.66■■□□□ 1.38
Rnf43Q5NCP0 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Rnf43Q5NCP0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC23.65■■□□□ 1.38
Rnf43Q5NCP0 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Rnf43Q5NCP0 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC23.65■■□□□ 1.38
Rnf43Q5NCP0 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Rnf43Q5NCP0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Rnf43Q5NCP0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Rnf43Q5NCP0 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
Rnf43Q5NCP0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Rnf43Q5NCP0 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
Rnf43Q5NCP0 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Rnf43Q5NCP0 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Rnf43Q5NCP0 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Rnf43Q5NCP0 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Rnf43Q5NCP0 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Rnf43Q5NCP0 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.61■■□□□ 1.37
Rnf43Q5NCP0 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.61■■□□□ 1.37
Rnf43Q5NCP0 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Rnf43Q5NCP0 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Rnf43Q5NCP0 Gm10420-201ENSMUST00000121713 882 ntBASIC23.6■■□□□ 1.37
Rnf43Q5NCP0 AC153911.1-201ENSMUST00000220378 758 ntBASIC23.6■■□□□ 1.37
Rnf43Q5NCP0 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Rnf43Q5NCP0 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rnf43Q5NCP0 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Rnf43Q5NCP0 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Rnf43Q5NCP0 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.59■■□□□ 1.37
Rnf43Q5NCP0 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rnf43Q5NCP0 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC23.58■■□□□ 1.37
Rnf43Q5NCP0 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Rnf43Q5NCP0 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
Rnf43Q5NCP0 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Rnf43Q5NCP0 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Rnf43Q5NCP0 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Rnf43Q5NCP0 Gm5812-201ENSMUST00000061073 957 ntBASIC23.57■■□□□ 1.36
Rnf43Q5NCP0 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC23.56■■□□□ 1.36
Rnf43Q5NCP0 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Rnf43Q5NCP0 Gm5921-201ENSMUST00000075898 882 ntBASIC23.56■■□□□ 1.36
Rnf43Q5NCP0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.55■■□□□ 1.36
Rnf43Q5NCP0 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Rnf43Q5NCP0 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Rnf43Q5NCP0 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Rnf43Q5NCP0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Rnf43Q5NCP0 Terc-201ENSMUST00000082862 423 ntBASIC23.52■■□□□ 1.36
Rnf43Q5NCP0 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Rnf43Q5NCP0 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC23.51■■□□□ 1.35
Rnf43Q5NCP0 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Rnf43Q5NCP0 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Rnf43Q5NCP0 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Rnf43Q5NCP0 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.51■■□□□ 1.35
Rnf43Q5NCP0 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Rnf43Q5NCP0 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Rnf43Q5NCP0 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Rnf43Q5NCP0 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Rnf43Q5NCP0 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
Rnf43Q5NCP0 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Rnf43Q5NCP0 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Rnf43Q5NCP0 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.49■■□□□ 1.35
Rnf43Q5NCP0 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC23.49■■□□□ 1.35
Rnf43Q5NCP0 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Rnf43Q5NCP0 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Rnf43Q5NCP0 Amer2-203ENSMUST00000225247 2662 ntBASIC23.46■■□□□ 1.35
Rnf43Q5NCP0 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC23.46■■□□□ 1.35
Rnf43Q5NCP0 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Rnf43Q5NCP0 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Rnf43Q5NCP0 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Rnf43Q5NCP0 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Rnf43Q5NCP0 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Rnf43Q5NCP0 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Rnf43Q5NCP0 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Rnf43Q5NCP0 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Rnf43Q5NCP0 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.43■■□□□ 1.34
Rnf43Q5NCP0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Rnf43Q5NCP0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Rnf43Q5NCP0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Rnf43Q5NCP0 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Rnf43Q5NCP0 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Rnf43Q5NCP0 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Rnf43Q5NCP0 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC23.4■■□□□ 1.34
Rnf43Q5NCP0 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Rnf43Q5NCP0 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Rnf43Q5NCP0 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
Rnf43Q5NCP0 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Rnf43Q5NCP0 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
Rnf43Q5NCP0 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Rnf43Q5NCP0 Gm22567-201ENSMUST00000175542 342 ntBASIC23.38■■□□□ 1.33
Rnf43Q5NCP0 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Rnf43Q5NCP0 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Rnf43Q5NCP0 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Rnf43Q5NCP0 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms