Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Chmp6P0C0A3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Chmp6P0C0A3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Chmp6P0C0A3 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Chmp6P0C0A3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Chmp6P0C0A3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Chmp6P0C0A3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Chmp6P0C0A3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Chmp6P0C0A3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Chmp6P0C0A3 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
Chmp6P0C0A3 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
Chmp6P0C0A3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.76■■□□□ 1.55
Chmp6P0C0A3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Chmp6P0C0A3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
Chmp6P0C0A3 Gm4799-201ENSMUST00000095396 657 ntBASIC24.75■■□□□ 1.55
Chmp6P0C0A3 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Chmp6P0C0A3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Chmp6P0C0A3 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Chmp6P0C0A3 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
Chmp6P0C0A3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
Chmp6P0C0A3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Chmp6P0C0A3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Chmp6P0C0A3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Chmp6P0C0A3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
Chmp6P0C0A3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Chmp6P0C0A3 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC24.72■■□□□ 1.55
Chmp6P0C0A3 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
Chmp6P0C0A3 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.72■■□□□ 1.55
Chmp6P0C0A3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Chmp6P0C0A3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.72■■□□□ 1.55
Chmp6P0C0A3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Chmp6P0C0A3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Chmp6P0C0A3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC24.7■■□□□ 1.55
Chmp6P0C0A3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
Chmp6P0C0A3 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.69■■□□□ 1.54
Chmp6P0C0A3 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC24.69■■□□□ 1.54
Chmp6P0C0A3 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Chmp6P0C0A3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Chmp6P0C0A3 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC24.68■■□□□ 1.54
Chmp6P0C0A3 Gm6311-201ENSMUST00000073790 878 ntBASIC24.68■■□□□ 1.54
Chmp6P0C0A3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Chmp6P0C0A3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chmp6P0C0A3 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Chmp6P0C0A3 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Chmp6P0C0A3 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC24.65■■□□□ 1.54
Chmp6P0C0A3 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chmp6P0C0A3 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chmp6P0C0A3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chmp6P0C0A3 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chmp6P0C0A3 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.64■■□□□ 1.54
Chmp6P0C0A3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Chmp6P0C0A3 Gm14121-201ENSMUST00000121441 1380 ntBASIC24.64■■□□□ 1.53
Chmp6P0C0A3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.53
Chmp6P0C0A3 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Chmp6P0C0A3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chmp6P0C0A3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Chmp6P0C0A3 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
Chmp6P0C0A3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC24.61■■□□□ 1.53
Chmp6P0C0A3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
Chmp6P0C0A3 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Chmp6P0C0A3 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Chmp6P0C0A3 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
Chmp6P0C0A3 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chmp6P0C0A3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chmp6P0C0A3 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chmp6P0C0A3 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chmp6P0C0A3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chmp6P0C0A3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chmp6P0C0A3 Mir3960-201ENSMUST00000198213 73 ntBASIC24.59■■□□□ 1.53
Chmp6P0C0A3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Chmp6P0C0A3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp6P0C0A3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp6P0C0A3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp6P0C0A3 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.58■■□□□ 1.53
Chmp6P0C0A3 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chmp6P0C0A3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chmp6P0C0A3 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp6P0C0A3 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.57■■□□□ 1.52
Chmp6P0C0A3 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp6P0C0A3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp6P0C0A3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp6P0C0A3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC24.56■■□□□ 1.52
Chmp6P0C0A3 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp6P0C0A3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp6P0C0A3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp6P0C0A3 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.55■■□□□ 1.52
Chmp6P0C0A3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp6P0C0A3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp6P0C0A3 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.55■■□□□ 1.52
Chmp6P0C0A3 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Chmp6P0C0A3 AC154454.1-201ENSMUST00000225253 216 ntBASIC24.54■■□□□ 1.52
Chmp6P0C0A3 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp6P0C0A3 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp6P0C0A3 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC24.53■■□□□ 1.52
Chmp6P0C0A3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 71.8 ms