RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC2A14Q8TDB8 520 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 MARVELD3Q96A59 401 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 RHBDF1Q96CC6 855 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 NSUN5Q96P11 429 aaKnown RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 SLC30A2Q9BRI3 323 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 HEBP1Q9NRV9 189 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 PKP3Q9Y446 797 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TEX51A0A1B0GUA7 166 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 CXCR6O00574 342 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SHOXO15266 292 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 TPPPO94811 219 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 F9P00740 461 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 IQCF3P0C7M6 154 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 MTHFD2P13995 350 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 FDXRP22570 491 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 GADD45AP24522 165 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 LIPAP38571 399 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 HTR2BP41595 481 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 OLR1P78380 273 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SIM2Q14190 667 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 TIGD6Q17RP2 521 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PARP15Q460N3 678 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 BCL7AQ4VC05 210 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SYPL2Q5VXT5 272 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 ANKRD34AQ69YU3 496 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 RANBP10Q6VN20 620 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF767PQ75MW2 155 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 NRARPQ7Z6K4 114 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 RYBPQ8N488 228 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 FBXO39Q8N4B4 442 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 BLOC1S5Q8TDH9 187 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PYCR2Q96C36 320 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 TNIP3Q96KP6 325 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 MFSD1Q9H3U5 465 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SYTL2Q9HCH5 934 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 WDR6Q9NNW5 1121 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 DCAF13Q9NV06 445 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 MOSPD1Q9UJG1 213 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 NDRG4Q9ULP0 352 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SNX6Q9UNH7 406 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 BOLA1Q9Y3E2 137 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 MEIOCA2RUB1 952 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 RRN3P2A6NIE6 340 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 KERAO60938 352 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SLITRK5O94991 958 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 KRT20P35900 424 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PIK3CBP42338 1070 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 NRIP1P48552 1158 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 TUFMP49411 452 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 GPLD1P80108 840 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 CYP4F3Q08477 520 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 AMHR2Q16671 573 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SYT16Q17RD7 645 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 GPAT3Q53EU6 434 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 ARMCX4Q5H9R4 360 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 C6orf136Q5SQH8 315 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 KIAA1614Q5VZ46 1190 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 GDF6Q6KF10 455 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 EFCAB12Q6NXP0 572 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 AHSA2Q719I0 299 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 DET1Q7L5Y6 550 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SLC46A3Q7Z3Q1 461 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 TMEM179BQ7Z7N9 219 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 GPR149Q86SP6 731 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 ESX1Q8N693 406 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 NATD1Q8N6N6 113 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 STAG3L4Q8TBR4 150 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 KCTD13Q8WZ19 329 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SLC7A6Q92536 515 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 MYDGFQ969H8 173 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PABPC5Q96DU9 382 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PGAP3Q96FM1 320 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 OR2A14Q96R47 310 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 CITED4Q96RK1 184 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 ATOH8Q96SQ7 321 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 HTATIP2Q9BUP3 242 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 THUMPD3Q9BV44 507 aaKnown RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 SEMA4BQ9NPR2 832 aaPredicted RBP10.59□□□□□ -0.71
UPF3A-212ENST00000619079 DYRK4Q9NR20 520 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 PLSCR3Q9NRY6 295 aa10.59□□□□□ -0.71
UPF3A-212ENST00000619079 A0A1W2PQ72 361 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 SUPT3HB4E1H0 165 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 H3BQ06 376 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 GABRDO14764 452 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 SEC22BO75396 215 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PMPCBO75439 489 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 S1PR4O95977 384 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CD4P01730 458 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 SLC4A1P02730 911 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 RPS17P08708 135 aaKnown RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 MLLT3P42568 568 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 SUOXP51687 545 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 GBX1Q14549 363 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 OR4D1Q15615 310 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 DDR2Q16832 855 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TIMM50Q3ZCQ8 353 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TOR1AIP1Q5JTV8 583 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PIK3R6Q5UE93 754 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CPZQ66K79 652 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms