RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DCDP81605 110 aaKnown RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 INPP5JQ15735 1006 aaPredicted RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 DEFB110Q30KQ9 67 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 SYTL3Q4VX76 610 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 DNAJC21Q5F1R6 531 aaKnown RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 TSTD2Q5T7W7 516 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 AFTPHQ6ULP2 937 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 ZNF534Q76KX8 674 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 SLC22A15Q8IZD6 547 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 TXLNBQ8N3L3 684 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 DNAAF3Q8N9W5 541 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 ATG4AQ8WYN0 398 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 PNPLA2Q96AD5 504 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 FRMD8P1Q9BZ68 369 aaPredicted RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 ETNK1Q9HBU6 452 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 C5AR2Q9P296 337 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 SLC2A6Q9UGQ3 507 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 CDYLQ9Y232 598 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 TDRKHQ9Y2W6 561 aaKnown RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 F8W8V4 182 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 ZSCAN9O15535 394 aaPredicted RBP16.49■□□□□ 0.23
CLN3-216ENST00000565316 LIASO43766 372 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 KDM1AO60341 852 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 GOT2P00505 430 aaKnown RBP16.49■□□□□ 0.23
CLN3-216ENST00000565316 ADRA1DP25100 572 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 PKLRP30613 574 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 OTX2P32243 289 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 GRIA1P42261 906 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 GCGRP47871 477 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 KYNUQ16719 465 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 FHL5Q5TD97 284 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 VWA5B1Q5TIE3 1220 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 C1orf189Q5VU69 101 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 MLIPQ5VWP3 458 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 SLC6A19Q695T7 634 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 MRPL14Q6P1L8 145 aaKnown RBP16.49■□□□□ 0.23
CLN3-216ENST00000565316 TLDC1Q6P9B6 456 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 NLRP9Q7RTR0 991 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 OR2Y1Q8NGV0 311 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 OR4L1Q8NH43 312 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 PEX13Q92968 403 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 ZNF778Q96MU6 729 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 TTC1Q99614 292 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 MENTQ9BUN1 341 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 AP1M1Q9BXS5 423 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 CASS4Q9NQ75 786 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 PLAGL1Q9UM63 463 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 SRPK3Q9UPE1 567 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 PLCL2Q9UPR0 1127 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 ICE1Q9Y2F5 2266 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 FER1L5A0AVI2 2057 aa16.49■□□□□ 0.23
CLN3-216ENST00000565316 CNOT3O75175 753 aaKnown RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 GPC4O75487 556 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 GAS8O95995 478 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 IGHEP01854 428 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 VARSP26640 1264 aaKnown RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 CCR7P32248 378 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 RAB28P51157 221 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 NKAIN1Q4KMZ8 207 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 PRR30Q53SZ7 412 aaPredicted RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 VRK3Q8IV63 474 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 ZNF655Q8N720 491 aaPredicted RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 LINC01555Q8NAE3 123 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 FER1L6-AS2Q96M78 137 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 DESI2Q9BSY9 194 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 CARD6Q9BX69 1037 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 MFRPQ9BY79 579 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 LRRC4CQ9HCJ2 640 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 IFT80Q9P2H3 777 aaPredicted RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 IMPACTQ9P2X3 320 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 DHCR7Q9UBM7 475 aaKnown RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 GPN3Q9UHW5 284 aaPredicted RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 PTRH2Q9Y3E5 179 aaKnown RBP16.48■□□□□ 0.23
CLN3-216ENST00000565316 CAPN6Q9Y6Q1 641 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 DOPEY1Q5JWR5 2465 aa16.48■□□□□ 0.23
CLN3-216ENST00000565316 ISM1B1AKI9 464 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 AGFG2O95081 481 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 ONECUT2O95948 504 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 FOLR3P41439 243 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 SOX8P57073 446 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 GRB7Q14451 532 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 SEMA3AQ14563 771 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 DCAF10Q5QP82 559 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 IGFL3Q6UXB1 125 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 PPP1R21Q6ZMI0 780 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 RNF10Q8N5U6 811 aaKnown RBP16.47■□□□□ 0.23
CLN3-216ENST00000565316 UBE2Q2Q8WVN8 375 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 ASZ1Q8WWH4 475 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 PTERQ96BW5 349 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 SLAMF7Q9NQ25 335 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 ENAMQ9NRM1 1142 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 SLC22A11Q9NSA0 550 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 EURLQ9NYK6 297 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 TCAF1Q9Y4C2 921 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 ESPL1Q14674 2120 aa16.47■□□□□ 0.23
CLN3-216ENST00000565316 TCP11X1B4DZS4 312 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 SLCO2B1O94956 709 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 IFNB1P01574 187 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 UMODP07911 640 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 AOAHP28039 575 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms