RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TP53BP2Q13625 1128 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 CACHD1Q5VU97 1274 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 NXNL2Q5VZ03 156 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 LAIR1Q6GTX8 287 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 TWF2Q6IBS0 349 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 OR2T5Q6IEZ7 315 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 LETMD1Q6P1Q0 360 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 CEP68Q76N32 757 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 GET4Q7L5D6 327 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ZMIZ2Q8NF64 920 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 OR2T29Q8NH02 315 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 GRPEL2Q8TAA5 225 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 IMP4Q96G21 291 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 SMARCD1Q96GM5 515 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 SEMA3CQ99985 751 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 C1orf109Q9NX04 203 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 STMN3Q9NZ72 180 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 NUP214P35658 2090 aaPredicted RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ICMTO60725 284 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 JUNDP17535 347 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CYP2C18P33260 490 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SCNN1GP51170 649 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CLCNKBP51801 687 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 HMGCS1Q01581 520 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 FADDQ13158 208 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF235Q14590 738 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CEP78Q5JTW2 689 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 KIAA0319Q5VV43 1072 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 KIAA1614Q5VZ46 1190 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CPZQ66K79 652 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 GALNT10Q86SR1 603 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SLC43A3Q8NBI5 491 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SIDT2Q8NBJ9 832 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 RHBDF1Q96CC6 855 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ZFP42Q96MM3 310 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CCDC115Q96NT0 180 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 DERL2Q9GZP9 239 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 REEP1Q9H902 201 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 TMEM30AQ9NV96 361 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 VNN3Q9NY84 501 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 E9PAM4 449 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ARNTLO00327 626 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PER2O15055 1255 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ARHGEF9O43307 516 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 TGFBR2P37173 567 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 DAPP51397 102 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CREMQ03060 361 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 STARD3Q14849 445 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 FXNQ16595 210 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SHQ1Q6PI26 577 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 DPP9Q86TI2 863 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 NKAPQ8N5F7 415 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 RASSF5Q8WWW0 418 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 FCGR1BQ92637 280 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 DPF3Q92784 378 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 HMCESQ96FZ2 354 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 TRNT1Q96Q11 434 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 EGFL8Q99944 293 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SYT17Q9BSW7 474 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ASB1Q9Y576 335 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 LYVE1Q9Y5Y7 322 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 LCHNA4D1U4 455 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 IFRD1O00458 451 aaPredicted RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 SCO2O43819 266 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CPNE3O75131 537 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PGRP06401 933 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 IGFBP6P24592 240 aaPredicted RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 STC1P52823 247 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 IL2P60568 153 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CXCR4P61073 352 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 RPP38P78345 283 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CD83Q01151 205 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 LRRC26Q2I0M4 334 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PAN2Q504Q3 1202 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 CARD16Q5EG05 197 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ZC3H12BQ5HYM0 836 aaKnown RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PRSS36Q5K4E3 855 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 LIX1Q8N485 282 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 KRTCAP2Q8N6L1 136 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 JPH3Q8WXH2 748 aaPredicted RBP12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PIK3R3Q92569 461 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 MYDGFQ969H8 173 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 PSMG2Q969U7 264 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ULK4Q96C45 1275 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 TOR4AQ9NXH8 423 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 TEKT2Q9UIF3 430 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 ABCG2Q9UNQ0 655 aa12.57□□□□□ -0.4
SFSWAP-209ENST00000540469 MEN1O00255 615 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 LDB2O43679 373 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 NIPSNAP2O75323 286 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 VIPP01282 170 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 PRKCDQ05655 676 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 KEAP1Q14145 624 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 RTL3Q8N8U3 475 aaKnown RBP12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 SCAMP5Q8TAC9 235 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 UTP15Q8TED0 518 aaKnown RBP12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 GTF2H4Q92759 462 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 TMCO6Q96DC7 493 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 TPD52L3Q96J77 140 aa12.56□□□□□ -0.4
SFSWAP-209ENST00000540469 PPP3R2Q96LZ3 170 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms