RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 DTD2Q96FN9 168 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 PLEKHG4BQ96PX9 1271 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 CYTH2Q99418 400 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 C19orf43Q9BQ61 176 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 TXLNGYQ9BZA5 131 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 ASB8Q9H765 288 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 AKIRIN1Q9H9L7 192 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 IARS2Q9NSE4 1012 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 NSMCE4AQ9NXX6 385 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 IL1RAPL1Q9NZN1 696 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 PADI1Q9ULC6 663 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 PCDHGB7Q9Y5F8 929 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 ANKHD1Q8IWZ3 2542 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 MN1Q10571 1320 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 CCDC162PA2VCL2 907 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 GOLGA8KD6RF30 607 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 POC1B-GALNT4F8VUJ3 575 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 GOLGA8TH3BQL2 631 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 CD3EAPO15446 510 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SRP72O76094 671 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 KIAA0754O94854 1291 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 PRAMEF1O95521 474 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 PYGLP06737 847 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ERVK-10P10266 1014 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 GPR1P46091 355 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 CCL11P51671 97 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 DCDC1P59894 354 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SH3BP2P78314 561 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 CACNG1Q06432 222 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 IL11RAQ14626 422 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SP5Q6BEB4 398 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF470Q6ECI4 717 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 NEPROQ6NW34 567 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 HDXQ7Z353 690 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SNX20Q7Z614 316 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 MCEMP1Q8IX19 187 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 LMNTD2Q8IXW0 634 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 TRAM1L1Q8N609 369 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 PPM1NQ8N819 430 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 GPR26Q8NDV2 337 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF398Q8TD17 642 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 THAP4Q8WY91 577 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 PNPLA2Q96AD5 504 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 BARD1Q99728 777 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ZSCAN5AQ9BUG6 496 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 RIOK2Q9BVS4 552 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 MFRPQ9BY79 579 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ING2Q9H160 280 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ACBD3Q9H3P7 528 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ACTL8Q9H568 366 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SARS2Q9NP81 518 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SLAMF7Q9NQ25 335 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ASF1BQ9NVP2 202 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 KLHL3Q9UH77 587 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF451Q9Y4E5 1061 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 PKDREJQ9NTG1 2253 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 SPG11Q96JI7 2443 aa12.17□□□□□ -0.46
CLSTN3-208ENST00000538933 ZGRF1Q86YA3 2104 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 PIKFYVEQ9Y2I7 2098 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 A6NCN8 305 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 OR51F1A6NGY5 319 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 C21orf140B9A014 251 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 H7C0S8 307 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 NDUFS3O75489 264 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 C9P02748 559 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 INHBAP08476 426 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 FGF5P12034 268 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 TEAD1P28347 426 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 AKT1P31749 480 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 MSH2P43246 934 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 EPHA4P54764 986 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 HHEXQ03014 270 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ACVR1Q04771 509 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 FOXM1Q08050 763 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 NAB1Q13506 487 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 FRG1Q14331 258 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 CHRNA6Q15825 494 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 KBTBD12Q3ZCT8 623 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 PLEKHN1Q494U1 663 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 PYCR3Q53H96 274 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 CRB2Q5IJ48 1285 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 LYPLAL1Q5VWZ2 237 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF449Q6P9G9 518 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 TRMT10BQ6PF06 316 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 IYDQ6PHW0 289 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF765Q7L2R6 523 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 TAOK1Q7L7X3 1001 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 TECPR1Q7Z6L1 1165 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 SCAMP4Q969E2 229 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ULK4Q96C45 1275 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 EID2BQ96D98 161 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ZMYND15Q9H091 742 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ABCG8Q9H221 673 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 FAM96AQ9H5X1 160 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 ACSS3Q9H6R3 686 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 IL26Q9NPH9 171 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 LHX9Q9NQ69 397 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 OGFRQ9NZT2 677 aa12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 PCYT1BQ9Y5K3 369 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-208ENST00000538933 PCSK5Q92824 1860 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms