RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NPWQ8N729 165 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 GPR26Q8NDV2 337 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 OR10Q1Q8NGQ4 319 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 SMARCE1Q969G3 411 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ZNF354BQ96LW1 612 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ZWILCHQ9H900 591 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 DMRT3Q9NQL9 472 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 SLC22A11Q9NSA0 550 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 DTLQ9NZJ0 730 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 HOOK1Q9UJC3 728 aaKnown RBP8.77□□□□□ -1.01
USP28-205ENST00000537706 C3orf18Q9UK00 162 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 GOSR1O95249 250 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 MT-CYBP00156 380 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 SLC4A1P02730 911 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 CALB1P05937 261 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 MMEP08473 750 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SERPINB6P35237 376 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 ARL4AP40617 200 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 HSF1Q00613 529 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 DPCR1Q3MIW9 517 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 LDLRAP1Q5SW96 308 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 ERMARDQ5T6L9 678 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 METRNLQ641Q3 311 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TMEM220Q6QAJ8 160 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TMCO3Q6UWJ1 677 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 NEK10Q6ZWH5 1172 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 LRRC75A-AS1Q8N1F1 130 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 C8orf44Q96CB5 159 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 RBM41Q96IZ5 413 aaKnown RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 Q96MF0 132 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 FERD3LQ96RJ6 166 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 KCTD15Q96SI1 283 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 UTP23Q9BRU9 249 aaKnown RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 TRIM51Q9BSJ1 452 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 GPR63Q9BZJ6 419 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TTLL3Q9Y4R7 772 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 NUP210LQ5VU65 1888 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 VSTM2BA6NLU5 285 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SIGLEC16A6NMB1 481 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 H3BMH7 237 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 H3BRJ5 948 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 BTN3A3O00478 584 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 MAFKO60675 156 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SMPD2O60906 423 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 PNMA6AP0CW24 399 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 COX6A1P12074 109 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 PON1P27169 355 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 NSFP46459 744 aaKnown RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 HCAR3P49019 387 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TMPRSS15P98073 1019 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 PMPCAQ10713 525 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 QPCTQ16769 361 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 LONRF2Q1L5Z9 754 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SLC25A35Q3KQZ1 300 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 FLYWCH1Q4VC44 716 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 PPP6R3Q5H9R7 873 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 KLHL10Q6JEL2 608 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TIGD7Q6NT04 549 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 DNAJC24Q6P3W2 148 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 ZNF449Q6P9G9 518 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 FAM83HQ6ZRV2 1179 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 AMIGO1Q86WK6 493 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 LRRC49Q8IUZ0 686 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SIAH3Q8IW03 269 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TMEM151BQ8IW70 566 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 MRFAP1L1Q96HT8 127 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 SEC16BQ96JE7 1060 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 FRMD6Q96NE9 622 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 TRIM5Q9C035 493 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 AMBRA1Q9C0C7 1298 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 FAM60AQ9NP50 221 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 CUTCQ9NTM9 273 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 ADAM22Q9P0K1 906 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 ZNF282Q9UDV7 671 aaPredicted RBP8.76□□□□□ -1.01
USP28-205ENST00000537706 ASB1Q9Y576 335 aa8.76□□□□□ -1.01
USP28-205ENST00000537706 STAB1Q9NY15 2570 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 COL6A5A8TX70 2615 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 A0A0J9YY10 115 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 MGAT4DA6NG13 374 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 ANKRD66B4E2M5 251 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 IFRD1O00458 451 aaPredicted RBP8.75□□□□□ -1.01
USP28-205ENST00000537706 PEX11BO96011 259 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 ZFP36L2P47974 494 aaKnown RBP8.75□□□□□ -1.01
USP28-205ENST00000537706 GSCP56915 257 aaPredicted RBP8.75□□□□□ -1.01
USP28-205ENST00000537706 APBA1Q02410 837 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 EEF1A2Q05639 463 aaKnown RBP8.75□□□□□ -1.01
USP28-205ENST00000537706 KLC1Q07866 573 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 PNOCQ13519 176 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 GRM7Q14831 915 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 OR1C1Q15619 314 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 DCUN1D2Q6PH85 259 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 PRSS57Q6UWY2 283 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 KRTAP1-3Q8IUG1 177 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 MARVELD2Q8N4S9 558 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP28-205ENST00000537706 OR5M3Q8NGP4 307 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 NELFBQ8WX92 580 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 SRPK1Q96SB4 655 aaKnown RBP8.75□□□□□ -1.01
USP28-205ENST00000537706 VPS16Q9H269 839 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 TFB2MQ9H5Q4 396 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms