RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TPP1O14773 563 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 DSCR3O14972 297 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 SPTLC2O15270 562 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 NVLO15381 856 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 P4HA2O15460 535 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 LRRTM2O43300 516 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CCP110O43303 1012 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GRID2O43424 1007 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZG16O60844 167 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ATP2C2O75185 946 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PMPCBO75439 489 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZBED1O96006 694 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PAEPP09466 180 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GOLGA6DP0CG33 693 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GIMD1P0DJR0 217 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 KRT13P13646 458 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 COX6B1P14854 86 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 POLR2EP19388 210 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 DGKAP23743 735 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PRKCHP24723 683 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CD82P27701 267 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CORO1AP31146 461 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 PSMC2P35998 433 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 ETV5P41161 510 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ACADSBP45954 432 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PTDSS1P48651 473 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 CASP5P51878 434 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 NDST1P52848 882 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 COPB1P53618 953 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 MAP3K7CLP57077 242 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 MYL6P60660 151 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZNF177Q13360 481 aaPredicted RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 ARHGEF7Q14155 803 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 DHX8Q14562 1220 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 ZRSR2Q15696 482 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 CNGA2Q16280 664 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 C4orf46Q504U0 113 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 COBLL1Q53SF7 1204 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZRANB3Q5FWF4 1079 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PXDC1Q5TGL8 231 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 NAPEPLDQ6IQ20 393 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 DARS2Q6PI48 645 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 TMEM65Q6PI78 240 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZDHHC24Q6UX98 284 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PTCHD4Q6ZW05 846 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PRPF39Q86UA1 669 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 TGIF2LYQ8IUE0 185 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 RAVER1Q8IY67 606 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 CCDC13Q8IYE1 715 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CEP57L1Q8IYX8 460 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZNF366Q8N895 744 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 HJURPQ8NCD3 748 aaPredicted RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 LINC00301Q8NCQ3 95 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZMIZ2Q8NF64 920 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 OR6C4Q8NGE1 309 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 SCAMP5Q8TAC9 235 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ADAMTS18Q8TE60 1221 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GANCQ8TET4 914 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 DDI1Q8WTU0 396 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 IPCEF1Q8WWN9 437 aaPredicted RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 ASB12Q8WXK4 309 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 LRTOMTQ8WZ04 291 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 NAT6Q93015 286 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CCDC127Q96BQ5 260 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 C19orf60Q96EN9 201 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 TMA16Q96EY4 203 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 SERPINB11Q96P15 392 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CATSPER2Q96P56 530 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 FCRL4Q96PJ5 515 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 SPAG5Q96R06 1193 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 KCNK16Q96T55 309 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PLIN2Q99541 437 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PABPC3Q9H361 631 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 LRRC4Q9HBW1 653 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 TMEM8AQ9HCN3 771 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GOLGA6AQ9NYA3 693 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 KLHL13Q9P2N7 655 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 CHORDC1Q9UHD1 332 aaPredicted RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 SLC12A6Q9UHW9 1150 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GGA2Q9UJY4 613 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 AGO1Q9UL18 857 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 COQ4Q9Y3A0 265 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZNF638Q14966 1978 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 OBSL1O75147 1896 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ANAPC1Q9H1A4 1944 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 GOLGA8IPA6NC78 632 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 GOLGA8JA6NMD2 632 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 RNF212BA8MTL3 300 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 MKRN2OSH3BPM6 223 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 M0R3H8 397 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TP73O15350 636 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ZW10O43264 779 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 FRS3O43559 492 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 RRP9O43818 475 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 TMPRSS11DO60235 418 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 INMTO95050 263 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 SIX3O95343 332 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 CBX6O95503 412 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 F9P00740 461 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 IGLV3-27P01718 113 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms