RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RAPH1Q70E73 1250 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 ZNF534Q76KX8 674 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 ZNF438Q7Z4V0 828 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 C11orf96Q7Z7L8 435 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 IFT20Q8IY31 132 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 GPR135Q8IZ08 494 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 GPR150Q8NGU9 434 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 FAM45AQ8TCE6 357 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 UBXN4Q92575 508 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 ART4Q93070 314 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 RAD51AP1Q96B01 352 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 MRRFQ96E11 262 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 TSPAN17Q96FV3 270 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 RMDN2Q96LZ7 410 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 TSNARE1Q96NA8 513 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 TEFMQ96QE5 360 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 TAAR9Q96RI9 348 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 CD180Q99467 661 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 ZPBPQ9BS86 351 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 MARCH4Q9P2E8 410 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 ZNF624Q9P2J8 865 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 SLC24A2Q9UI40 661 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 RARRES3Q9UL19 164 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 CORO1CQ9ULV4 474 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 PCDHGA8Q9Y5G5 932 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 PCYT1BQ9Y5K3 369 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 PRSS21Q9Y6M0 314 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 IGHV5-10-1A0A0J9YXX1 117 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 OR5K3A6NET4 321 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TLCD2A6NGC4 264 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 STMND1H3BQB6 276 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TOX3O15405 576 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 KLK10O43240 276 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 NIPSNAP2O75323 286 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ZBTB11O95625 1053 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 S100BP04271 92 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 GSTA2P09210 222 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 THRAP10827 490 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ENO3P13929 434 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 HGFP14210 728 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 BRAFP15056 766 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ITIH1P19827 911 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 CD82P27701 267 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 PDHA2P29803 388 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 CCR7P32248 378 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 RPA3P35244 121 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 IDH3AP50213 366 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 UCNP55089 124 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 GFERP55789 205 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 MPP1Q00013 466 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 MSLNQ13421 630 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 SEMA3AQ14563 771 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 SLMAPQ14BN4 828 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 NAA25Q14CX7 972 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TYSND1Q2T9J0 566 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TBC1D25Q3MII6 688 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 MANEAQ5SRI9 462 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TEX35Q5T0J7 233 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 FBXO38Q6PIJ6 1188 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 UNC5DQ6UXZ4 953 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 C3orf62Q6ZUJ4 267 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ADCK2Q7Z695 626 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 STRA8Q7Z7C7 330 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 B3GNT8Q7Z7M8 397 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TMEM135Q86UB9 458 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TAX1BP1Q86VP1 789 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 PPP1R3BQ86XI6 285 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 TMEM126BQ8IUX1 230 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 DENND6AQ8IWF6 608 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 SYTL1Q8IYJ3 562 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 SLC22A15Q8IZD6 547 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 LILRA3Q8N6C8 439 aaPredicted RBP7.81□□□□□ -1.16
USP40-216ENST00000485943 OR52E1Q8NGJ3 308 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 OR5AR1Q8NGP9 310 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 OR5K2Q8NHB8 316 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 MCOLN3Q8TDD5 553 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 RSC1A1Q92681 617 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 INPP5DQ92835 1189 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 USP7Q93009 1102 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 SIGLEC10Q96LC7 697 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 C9orf72Q96LT7 481 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 OR6C1Q96RD1 312 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 FMO2Q99518 471 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 LRRC1Q9BTT6 524 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 FAM129AQ9BZQ8 928 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 IGSF5Q9NSI5 407 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 SERTAD3Q9UJW9 196 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ST14Q9Y5Y6 855 aa7.81□□□□□ -1.16
USP40-216ENST00000485943 ESYT3A0FGR9 886 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 A6NCN8 305 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 ST8SIA5O15466 376 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 CCNDBP1O95273 360 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 MT-ND3P03897 115 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 RHOXF2BP0C7M4 288 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 CBSLP0DN79 551 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 MCM3P25205 808 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 AOAHP28039 575 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 GRNP28799 593 aaKnown RBP7.8□□□□□ -1.16
USP40-216ENST00000485943 CMPK1P30085 196 aa7.8□□□□□ -1.16
USP40-216ENST00000485943 SLC5A2P31639 672 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms