RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TMED3Q9Y3Q3 217 aa3.27□□□□□ -1.89
VPS41-207ENST00000439468 KIAA1210Q9ULL0 1709 aa3.27□□□□□ -1.89
VPS41-207ENST00000439468 FLT1P17948 1338 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 MED19A0JLT2 244 aaPredicted RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 NEMP2A6NFY4 417 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 AP5Z1O43299 807 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 TBCAO75347 108 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 IGHV2-70P01814 119 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 IGHV4-39P01824 125 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 SP1P08047 785 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 CETPP11597 493 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 PDGFRAP16234 1089 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 MARK3P27448 753 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 GP5P40197 560 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 DVL1P1P54792 670 aaPredicted RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 PHEXP78562 749 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 MFAP5Q13361 173 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 ITGA7Q13683 1181 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 VEZF1Q14119 521 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 UGP2Q16851 508 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 SPDYCQ5MJ68 293 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 DCAF10Q5QP82 559 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 PLA2G4FQ68DD2 849 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 TRMT1LQ7Z2T5 733 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 THNSL1Q8IYQ7 743 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 NKAIN3Q8N8D7 197 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 OR11H4Q8NGC9 324 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 LRRC8CQ8TDW0 803 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 ZNF473Q8WTR7 871 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 SSMEM1Q8WWF3 244 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 IRGQQ8WZA9 623 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 SPSB1Q96BD6 273 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 SEPHS2Q99611 448 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 RTP3Q9BQQ7 232 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 DESI2Q9BSY9 194 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 LRRC1Q9BTT6 524 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 TRMT61BQ9BVS5 477 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 UPF2Q9HAU5 1272 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 DNAJC4Q9NNZ3 241 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 ZFP57Q9NU63 452 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 TBC1D7Q9P0N9 293 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 TAAR2Q9P1P5 351 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 IL17BQ9UHF5 180 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 DAPK2Q9UIK4 370 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 CPSF3Q9UKF6 684 aaKnown RBP3.26□□□□□ -1.89
VPS41-207ENST00000439468 RIPK3Q9Y572 518 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 DOCK7Q96N67 2140 aa3.26□□□□□ -1.89
VPS41-207ENST00000439468 HECW2Q9P2P5 1572 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 A0A1W2PPI3 338 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 A0A1W2PPK0 400 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 A0A1W2PRB8 838 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 A0A1W2PS18 150 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 PRR23AA6NEV1 266 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 DUXAA6NLW8 204 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 FAM86B1E9PN63 330 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 PLOD2O00469 737 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 GAPDHSO14556 408 aaPredicted RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 CLIC2O15247 247 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 PDE9AO76083 593 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 NR3C1P04150 777 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 FAM86B2P0C5J1 330 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 HSPA8P11142 646 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 SCG2P13521 617 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 ZNF23P17027 643 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 RPS18P62269 152 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 PITX1P78337 314 aaPredicted RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 CX3CL1P78423 397 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 KIR2DS3Q14952 304 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 RBBP5Q15291 538 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 KRTAP24-1Q3LI83 254 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 LBHQ53QV2 105 aaPredicted RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 ASPRV1Q53RT3 343 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 XKR3Q5GH77 459 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 MPP7Q5T2T1 576 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 HECTD3Q5T447 861 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 MEX3BQ6ZN04 569 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 ERN2Q76MJ5 926 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 DET1Q7L5Y6 550 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 ADCK2Q7Z695 626 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 TLK2Q86UE8 772 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 TTC30BQ8N4P2 665 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 IQUBQ8NA54 791 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 THAP8Q8NA92 274 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 NPEPL1Q8NDH3 523 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 DMBX1Q8NFW5 382 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 OR2T12Q8NG77 320 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 GRHL3Q8TE85 626 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 ROBO4Q8WZ75 1007 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 EXT2Q93063 718 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 EXOC4Q96A65 974 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 THOC1Q96FV9 657 aaKnown RBP3.25□□□□□ -1.89
VPS41-207ENST00000439468 ST6GAL2Q96JF0 529 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 GBP5Q96PP8 586 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 MYADMQ96S97 322 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 RAD9AQ99638 391 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 CCDC3Q9BQI4 270 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 MGME1Q9BQP7 344 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 SLC25A23Q9BV35 468 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 SLC2A11Q9BYW1 496 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 EDEM3Q9BZQ6 932 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms