RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 METTL2BQ6P1Q9 378 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 TAX1BP1Q86VP1 789 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 PHC3Q8NDX5 983 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 EXT2Q93063 718 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 EGFL8Q99944 293 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 NUSAP1Q9BXS6 441 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 IMP3Q9NV31 184 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 ARL15Q9NXU5 204 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 UTP6Q9NYH9 597 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 SIRPGQ9P1W8 387 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 TNPO3Q9Y5L0 923 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 A0A1B0GTQ1 180 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 NEMP2A6NFY4 417 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 MYO1CO00159 1063 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 ARHGAP33O14559 1287 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 POLR3GO15318 223 aaPredicted RBP10.46□□□□□ -0.74
SS18-213ENST00000579640 CER1O95813 267 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 ANXA6P08133 673 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 CELA2BP08218 269 aaPredicted RBP10.46□□□□□ -0.74
SS18-213ENST00000579640 NEFHP12036 1026 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 HSD17B2P37059 387 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 PI4KAP42356 2102 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 BDKRB1P46663 353 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 TCF15Q12870 199 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 KRT33BQ14525 404 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 PDK4Q16654 411 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 PFKFB4Q16877 469 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.46□□□□□ -0.74
SS18-213ENST00000579640 IYDQ6PHW0 289 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 C10orf107Q8IVU9 208 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 RAB42Q8N4Z0 105 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 PTGR2Q8N8N7 351 aaPredicted RBP10.46□□□□□ -0.74
SS18-213ENST00000579640 OR9A1PQ8NGU1 263 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 ZFPM2Q8WW38 1151 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 CKAP2Q8WWK9 683 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 MAGEB18Q96M61 343 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 FERD3LQ96RJ6 166 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 POT1Q9NUX5 634 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 NCKIPSDQ9NZQ3 722 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 SCHIP1Q9P0W5 487 aaPredicted RBP10.46□□□□□ -0.74
SS18-213ENST00000579640 SPATA7Q9P0W8 599 aa10.46□□□□□ -0.74
SS18-213ENST00000579640 SDK1Q7Z5N4 2213 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 WDR91A4D1P6 747 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 NCF1BA6NI72 391 aaPredicted RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 ZNF839A8K0R7 811 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 NCF1CA8MVU1 366 aaPredicted RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 KHNYNO15037 678 aaKnown RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 YY2O15391 372 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 GUCA1CO95843 209 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 RETP07949 1114 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 NCF1P14598 390 aaPredicted RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 XRCC1P18887 633 aaPredicted RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 IMPDH1P20839 514 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 GRK2P25098 689 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 EPHA8P29322 1005 aaPredicted RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 SERPINB5P36952 375 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 ARHGAP19Q14CB8 494 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 SETDB1Q15047 1291 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 TCEA2Q15560 299 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 HLA-BQ31612 363 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 PRAMEF14Q5SWL7 426 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 ATG16L1Q676U5 607 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 RBM12BQ8IXT5 1001 aaKnown RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 FAM46DQ8NEK8 389 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 PRSS33Q8NF86 280 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 OR5AR1Q8NGP9 310 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 PPP1R14CQ8TAE6 165 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 ZDHHC1Q8WTX9 485 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 UBTD2Q8WUN7 234 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 RHBDF1Q96CC6 855 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 FBXL8Q96CD0 374 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 CXorf40BQ96DE9 158 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 L3HYPDHQ96EM0 354 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 MECRQ9BV79 373 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 RAB11FIP5Q9BXF6 653 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 C1QTNF3Q9BXJ4 246 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 ARRDC1-AS1Q9H2J1 176 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 CCDC134Q9H6E4 229 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 WWOXQ9NZC7 414 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 PTBP2Q9UKA9 531 aaKnown RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 TDRD6O60522 2096 aaKnown RBP10.45□□□□□ -0.74
SS18-213ENST00000579640 PCDH15Q96QU1 1955 aa10.45□□□□□ -0.74
SS18-213ENST00000579640 OR52A4PA6NMU1 304 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 KLF11O14901 512 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 EML2O95834 649 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SERPINE1P05121 402 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 FGF3P11487 239 aaPredicted RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 GGT5P36269 586 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CCT8P50990 548 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 HERVK_113P63132 956 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 GUCY1A3Q02108 690 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 PCBP2Q15366 365 aaKnown RBP eCLIP10.44□□□□□ -0.749e-6■□□□□ 8.7
SS18-213ENST00000579640 SHBQ15464 509 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 PLA2G2CQ5R387 149 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 RGS9BPQ6ZS82 235 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SLC9B2Q86UD5 537 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 TRIM48Q8IWZ4 208 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SFRP1Q8N474 314 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 MAPK15Q8TD08 544 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 LRRC8CQ8TDW0 803 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms