RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GGT1P19440 569 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 AKT1P31749 480 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 VEGFBP49765 207 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 WDR5P61964 334 aaKnown RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 MAP7Q14244 749 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 FAM174BQ3ZCQ3 159 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 PYCR3Q53H96 274 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SGO1Q5FBB7 561 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ZDHHC20Q5W0Z9 365 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 DPY19L3Q6ZPD9 716 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ALDH16A1Q8IZ83 802 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 LIX1Q8N485 282 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 AADATQ8N5Z0 425 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 RNF145Q96MT1 663 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ZNF641Q96N77 438 aaPredicted RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 CCDC115Q96NT0 180 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SLX1AQ9BQ83 275 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 BDH2Q9BUT1 245 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ABCG8Q9H221 673 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SLC32A1Q9H598 525 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CLMPQ9H6B4 373 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ZFP14Q9HCL3 533 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CD320Q9NPF0 282 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ARL15Q9NXU5 204 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 PDE10AQ9Y233 779 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ATP11BQ9Y2G3 1177 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ZFC3H1O60293 1989 aaKnown RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 H3BSA7 217 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 GRM6O15303 877 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 KRT6AP02538 564 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 MT-ND1P03886 318 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 KRT6BP04259 564 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ANXA6P08133 673 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 OR56A5P0C7T3 313 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 AOAHP28039 575 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 RPS9P46781 194 aaKnown RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 KRT6CP48668 564 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SPINT3P49223 89 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 PLIN5Q00G26 463 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 GBX1Q14549 363 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 MAPKAPK3Q16644 382 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ZXDCQ2QGD7 858 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 USP39Q53GS9 565 aaKnown RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 CARD16Q5EG05 197 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SPANXN4Q5MJ08 99 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ASTLQ6HA08 431 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 SUSD1Q6UWL2 747 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CCDC149Q6ZUS6 474 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 MPP4Q96JB8 637 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CORO1BQ9BR76 489 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SLC12A9Q9BXP2 914 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CEP44Q9C0F1 390 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ZDHHC6Q9H6R6 413 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 BRD9Q9H8M2 597 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 GORASP2Q9H8Y8 452 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 RMI1Q9H9A7 625 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 C1orf109Q9NX04 203 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SMPD3Q9NY59 655 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 TUBA8Q9NY65 449 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 THEGQ9P2T0 379 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 MBD1Q9UIS9 605 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 TMPRSS11EQ9UL52 423 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 V9GYQ6 96 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 DENND4CQ5VZ89 1909 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 TRIM64A6NGJ6 449 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 TRIM64CA6NLI5 447 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CLOCKO15516 846 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 BMP10O95393 424 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 UGT2B4P06133 528 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 PGRP06401 933 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 RAP2AP10114 183 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CDH2P19022 906 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 CPSF6Q16630 551 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS53-220ENST00000576149 CCDC92Q53HC0 331 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 CYBRD1Q53TN4 286 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 TTC33Q6PID6 262 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 UBE2R2Q712K3 238 aaPredicted RBP9.85□□□□□ -0.83
VPS53-220ENST00000576149 LRRC70Q7Z2Q7 622 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 TMEM25Q86YD3 366 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 MSRB3Q8IXL7 192 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ELMOD1Q8N336 334 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 KRTCAP2Q8N6L1 136 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 TNIP2Q8NFZ5 429 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 OR2T12Q8NG77 320 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ITFG1Q8TB96 612 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 VPS50Q96JG6 964 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 YME1L1Q96TA2 773 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ACTR8Q9H981 624 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 NTN4Q9HB63 628 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 PARVBQ9HBI1 364 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 B4GALT6Q9UBX8 382 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 ZNHIT2Q9UHR6 403 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SLCO3A1Q9UIG8 710 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 SLC25A13Q9UJS0 675 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 CCL26Q9Y258 94 aa9.85□□□□□ -0.83
VPS53-220ENST00000576149 A0A1W2PQ67 120 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 UPK1AO00322 258 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 NUAK1O60285 661 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 PRSS23O95084 383 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 C8GP07360 202 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms