RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 NKX2-1P43699 371 aaPredicted RBP5.34□□□□□ -1.55
YBX3-210ENST00000540975 LUMP51884 338 aaPredicted RBP5.34□□□□□ -1.55
YBX3-210ENST00000540975 SP3Q02447 781 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 PPARDQ03181 441 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 RRS1Q15050 365 aaKnown RBP5.34□□□□□ -1.55
YBX3-210ENST00000540975 TEAD2Q15562 447 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 NTRK2Q16620 822 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 ADAMTSL4-AS1Q5T5F5 129 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 SPATA1Q5VX52 437 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 BHLHB9Q6PI77 547 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 JAKMIP2Q96AA8 810 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 ZNF653Q96CK0 615 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 FNBP1Q96RU3 617 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 ERVMER34-1Q9H9K5 563 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 ZDHHC18Q9NUE0 388 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 B3GAT1Q9P2W7 334 aa5.34□□□□□ -1.55
YBX3-210ENST00000540975 A0A087WW49 117 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 ZNF500O60304 480 aaPredicted RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 RNASEH1O60930 286 aaKnown RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 EIF2DP41214 584 aaKnown RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 STK4Q13043 487 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 RNASEH2BQ5TBB1 312 aaKnown RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 ZNF772Q68DY9 489 aaPredicted RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 TMPRSS11FQ6ZWK6 438 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 PIGZQ86VD9 579 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 TMEM173Q86WV6 379 aaPredicted RBP5.33□□□□□ -1.56
YBX3-210ENST00000540975 TMEM139Q8IV31 216 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 SCML4Q8N228 414 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 ARHGAP24Q8N264 748 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 EXD1Q8NHP7 514 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 LINC00479Q96M42 142 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 S1PR5Q9H228 398 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 PDE7BQ9NP56 450 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 TMEM5Q9Y2B1 443 aa5.33□□□□□ -1.56
YBX3-210ENST00000540975 A8MV72 311 aaPredicted RBP5.32□□□□□ -1.56
YBX3-210ENST00000540975 TCERG1O14776 1098 aaKnown RBP5.32□□□□□ -1.56
YBX3-210ENST00000540975 BEST1O76090 585 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 OR2T7P0C7T2 308 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 CA6P23280 308 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 SLC9A3P48764 834 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 BAATQ14032 418 aaPredicted RBP5.32□□□□□ -1.56
YBX3-210ENST00000540975 TAF13Q15543 124 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 AFAP1Q8N556 730 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 MINDY1Q8N5J2 469 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 KBTBD8Q8NFY9 601 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 OR2T11Q8NH01 316 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 PRPF31Q8WWY3 499 aaKnown RBP5.32□□□□□ -1.56
YBX3-210ENST00000540975 LPGAT1Q92604 370 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 TAF15Q92804 592 aaKnown RBP eCLIP5.32□□□□□ -1.56
YBX3-210ENST00000540975 POM121L2Q96KW2 1035 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 OPRPNQ99935 248 aaPredicted RBP5.32□□□□□ -1.56
YBX3-210ENST00000540975 CCDC68Q9H2F9 335 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 SLC35C2Q9NQQ7 365 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 BARHL2Q9NY43 387 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 PRSS21Q9Y6M0 314 aa5.32□□□□□ -1.56
YBX3-210ENST00000540975 FEZF1A0PJY2 475 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 ANTXRLA6NF34 631 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 ARHGEF9O43307 516 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 ZFAND5O76080 213 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 ACTN2P35609 894 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 CLK1P49759 484 aaKnown RBP5.31□□□□□ -1.56
YBX3-210ENST00000540975 PDX1P52945 283 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 CDH13P55290 713 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 SNRPD1P62314 119 aaKnown RBP5.31□□□□□ -1.56
YBX3-210ENST00000540975 PHLDA2Q53GA4 152 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 TMEM211Q6ICI0 200 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 PWWP2BQ6NUJ5 590 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 TMEM178AQ8NBL3 297 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 MAPK1IP1LQ8NDC0 245 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 APPL2Q8NEU8 664 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 OR4C3Q8NH37 302 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 ZNF622Q969S3 477 aaKnown RBP eCLIP5.31□□□□□ -1.56
YBX3-210ENST00000540975 MS4A10Q96PG2 267 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 UBA5Q9GZZ9 404 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 TBC1D17Q9HA65 648 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 SERINC1Q9NRX5 453 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 PLCXD1Q9NUJ7 323 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 NSMCE4AQ9NXX6 385 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 GDE1Q9NZC3 331 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 LRWD1Q9UFC0 647 aa5.31□□□□□ -1.56
YBX3-210ENST00000540975 TMEM221A6NGB7 291 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 CDC123O75794 336 aaPredicted RBP5.3□□□□□ -1.56
YBX3-210ENST00000540975 MAGEA11P43364 429 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 KRTAP10-12P60413 245 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 HERV-K104P61576 105 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 ITPRIPL2Q3MIP1 535 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 PSRC1Q6PGN9 363 aaPredicted RBP5.3□□□□□ -1.56
YBX3-210ENST00000540975 TICAM2Q86XR7 235 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 CFAP206Q8IYR0 622 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 NPEPL1Q8NDH3 523 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 OR2T6Q8NHC8 308 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 TMCO6Q96DC7 493 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 SPACA9Q96E40 222 aaPredicted RBP5.3□□□□□ -1.56
YBX3-210ENST00000540975 MXD3Q9BW11 206 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 WNT5BQ9H1J7 359 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.3□□□□□ -1.56
YBX3-210ENST00000540975 TAB2Q9NYJ8 693 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 MRPL15Q9P015 296 aaKnown RBP5.3□□□□□ -1.56
YBX3-210ENST00000540975 RNF215Q9Y6U7 377 aa5.3□□□□□ -1.56
YBX3-210ENST00000540975 ANKRD61A6NGH8 418 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms