RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZIC1Q15915 447 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 P3H1Q32P28 736 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 PRR30Q53SZ7 412 aaPredicted RBP10.97□□□□□ -0.65
VPS28-214ENST00000531032 SLC6A19Q695T7 634 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 RHBDD2Q6NTF9 364 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 UNC5AQ6ZN44 842 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 MRGPREQ86SM8 312 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 KIAA1328Q86T90 577 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 RAB43Q86YS6 212 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 TMTC1Q8IUR5 882 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 TBC1D21Q8IYX1 336 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 GPR135Q8IZ08 494 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 RBMXL3Q8N7X1 1067 aaKnown RBP10.97□□□□□ -0.65
VPS28-214ENST00000531032 TTC13Q8NBP0 860 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 OR5K2Q8NHB8 316 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 FLVCR1-AS1Q8TAF5 88 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 PNPLA2Q96AD5 504 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 IP6K3Q96PC2 410 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 OR2A14Q96R47 310 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 C17orf62Q9BQA9 187 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 LACRTQ9GZZ8 138 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 GPR83Q9NYM4 423 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 SMARCAL1Q9NZC9 954 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 OR6C2Q9NZP2 312 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 POLG2Q9UHN1 485 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 ASF1AQ9Y294 204 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 PRSS21Q9Y6M0 314 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 AP1M2Q9Y6Q5 423 aa10.97□□□□□ -0.65
VPS28-214ENST00000531032 TEX15Q9BXT5 2789 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SLC5A10A0PJK1 596 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 GOLGA6L9A6NEM1 432 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 A6NL46 340 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 BHMG1C9JSJ3 638 aaPredicted RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 HCRTR1O43613 425 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 OR2B3O76000 313 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 AP2A1O95782 977 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 FTH1P02794 183 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 CHRM5P08912 532 aaPredicted RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 TPBGLP0DKB5 382 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 MSNP26038 577 aaKnown RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 VARSP26640 1264 aaKnown RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 FOXN2P32314 431 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 GDF10P55107 478 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SSPNQ14714 243 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 VWA5B1Q5TIE3 1220 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 TRIM73Q86UV7 250 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 HOOK3Q86VS8 718 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 TXLNBQ8N3L3 684 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SLC35B2Q8TB61 432 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 PROKR1Q8TCW9 393 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SSC4DQ8WTU2 575 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 ELMO1Q92556 727 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SGSM3Q96HU1 749 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 GBP5Q96PP8 586 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 SLAMF7Q9NQ25 335 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 CUEDC1Q9NWM3 386 aaPredicted RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 PIH1D1Q9NWS0 290 aaKnown RBP10.96□□□□□ -0.65
VPS28-214ENST00000531032 SPHK1Q9NYA1 384 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 C5AR2Q9P296 337 aa10.96□□□□□ -0.65
VPS28-214ENST00000531032 UNC79Q9P2D8 2635 aa10.96□□□□□ -0.66
VPS28-214ENST00000531032 ESPL1Q14674 2120 aa10.96□□□□□ -0.66
VPS28-214ENST00000531032 A0A0J9YY10 115 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 TCP11X1B4DZS4 312 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 ZSCAN9O15535 394 aaPredicted RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 PSMD3O43242 534 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 SEMA7AO75326 666 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 SNRNP200O75643 2136 aaKnown RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 PTMAP06454 111 aaKnown RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 CD63P08962 238 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 CBSLP0DN79 551 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 OTX2P32243 289 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 CBSP35520 551 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 DCDP81605 110 aaKnown RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 PLOD1Q02809 727 aaPredicted RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 SLC5A12Q1EHB4 618 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 DEFB110Q30KQ9 67 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 C4orf17Q53FE4 359 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 RAD9BQ6WBX8 426 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 LINC00523Q86TU6 105 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 OR13J1Q8NGT2 312 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 OR2Y1Q8NGV0 311 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 N4BP2L2Q92802 583 aaPredicted RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 ALS2CR12Q96Q35 445 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 TMEM121Q9BTD3 319 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 MFRPQ9BY79 579 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 SPRTNQ9H040 489 aaPredicted RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 LUZP4Q9P127 313 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 PLEKHB1Q9UF11 243 aaPredicted RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 AMFRQ9UKV5 643 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 SRPK3Q9UPE1 567 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 R3HDM2Q9Y2K5 976 aaKnown RBP10.95□□□□□ -0.66
VPS28-214ENST00000531032 PCM1Q15154 2024 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 HIVEP3Q5T1R4 2406 aa10.95□□□□□ -0.66
VPS28-214ENST00000531032 CCDC88CQ9P219 2028 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 CCDC78A2IDD5 438 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 CCDC162PA2VCL2 907 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 OR51F1A6NGY5 319 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 ERI2A8K979 691 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 MIF4GDA9UHW6 222 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 CNOT3O75175 753 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms