RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 GFI1Q99684 422 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 NUDT16L1Q9BRJ7 211 aaKnown RBP3.27□□□□□ -1.89
VPS50-219ENST00000495039 LRRC61Q9BV99 259 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 RAB11FIP5Q9BXF6 653 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 P2RY12Q9H244 342 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 RCC2Q9P258 522 aaKnown RBP3.27□□□□□ -1.89
VPS50-219ENST00000495039 TSPYL4Q9UJ04 414 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 RARRES3Q9UL19 164 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 PCDHGA5Q9Y5G8 931 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 IGHV4-61A0A0C4DH41 118 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 A0A1W2PR77 199 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 NDUFS4O43181 175 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 BMP10O95393 424 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 DUS4LO95620 317 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 IGHV4-59P01825 116 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 SELLP14151 372 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 EIF2DP41214 584 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 NRIP1P48552 1158 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 MMP15P51511 669 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 PNLIPRP2P54317 469 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 TMF1P82094 1093 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 HNRNPDQ14103 355 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 RRS1Q15050 365 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 NTRK2Q16620 822 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 RAB6CQ53S08 254 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 TAF1BQ53T94 588 aaPredicted RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 CFAP58Q5T655 872 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 CLEC4GQ6UXB4 293 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 ZNF534Q76KX8 674 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 GALNT5Q7Z7M9 940 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 CEP295NLQ96MC4 621 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 KIFC3Q9BVG8 833 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 RTN4RQ9BZR6 473 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 TRIM6Q9C030 488 aaPredicted RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 RAB6CQ9H0N0 254 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 TMX4Q9H1E5 349 aaPredicted RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 CHMP1AQ9HD42 196 aaPredicted RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 LRWD1Q9UFC0 647 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 RPS6KA6Q9UK32 745 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 PLAGL1Q9UM63 463 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 PTRH2Q9Y3E5 179 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 YIPF1Q9Y548 306 aa3.26□□□□□ -1.89
VPS50-219ENST00000495039 PRRC2AP48634 2157 aaKnown RBP3.26□□□□□ -1.89
VPS50-219ENST00000495039 LOC100509620A0A075B734 347 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 OR2M5A3KFT3 312 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 KPNA7A9QM74 516 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 ZNF197O14709 1029 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 PAPSS1O43252 624 aaPredicted RBP3.25□□□□□ -1.89
VPS50-219ENST00000495039 AHCYL1O43865 530 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 AVILO75366 819 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 BEST1O76090 585 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 LDHCP07864 332 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 CAPN2P17655 700 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 UGT1A4P22310 534 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GAGE2BQ13066 116 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 MFAP5Q13361 173 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 SGSM1Q2NKQ1 1148 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GAGE2EQ4V326 116 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 IGSF11Q5DX21 431 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GAGE2AQ6NT46 116 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GPRIN3Q6ZVF9 776 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 INTS8Q75QN2 995 aaKnown RBP3.25□□□□□ -1.89
VPS50-219ENST00000495039 SLC16A9Q7RTY1 509 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 AACSQ86V21 672 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 KBTBD6Q86V97 674 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 PTOV1Q86YD1 416 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GALNT13Q8IUC8 556 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 C1orf52Q8N6N3 182 aaKnown RBP3.25□□□□□ -1.89
VPS50-219ENST00000495039 MCUQ8NE86 351 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 APPL2Q8NEU8 664 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 TBC1D16Q8TBP0 767 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 PAFAH2Q99487 392 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 HGH1Q9BTY7 390 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 MXD3Q9BW11 206 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 SEMA6AQ9H2E6 1030 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GIMAP4Q9NUV9 329 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 PSD3Q9NYI0 1048 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 TAS2R14Q9NYV8 317 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 GAGE2DQ9UEU5 116 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 SWAP70Q9UH65 585 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 AMACRQ9UHK6 382 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 SNX8Q9Y5X2 465 aa3.25□□□□□ -1.89
VPS50-219ENST00000495039 ASTN2O75129 1339 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 LNP1A1A4G5 178 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 A8MV72 311 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 ENTPD3O75355 529 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 CDC123O75794 336 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 STARD3NLO95772 234 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 PRLRP16471 622 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 BDNFP23560 247 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 NMBRP28336 390 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 HNF4AP41235 474 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ARSEP51690 589 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 STAT2P52630 851 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 SNRPEP62304 92 aaKnown RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 PSMC6P62333 389 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 CXCL9Q07325 125 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 COX10Q12887 443 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ELAVL2Q12926 359 aaKnown RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 PCLAFQ15004 111 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms