RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FOLR3P41439 243 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 GDF10P55107 478 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 PARP6Q2NL67 630 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 SLC6A19Q695T7 634 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 JMJD6Q6NYC1 403 aaPredicted RBP14.03□□□□□ -0.16
SDC1-204ENST00000429035 MED25Q71SY5 747 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 PEX26Q7Z412 305 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 TMTC1Q8IUR5 882 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 UBL4BQ8N7F7 174 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 TMEM102Q8N9M5 508 aaPredicted RBP14.03□□□□□ -0.16
SDC1-204ENST00000429035 DNAAF3Q8N9W5 541 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 TTC13Q8NBP0 860 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 CDKN2AIPNLQ96HQ2 116 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 TMEM121Q9BTD3 319 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 SLC29A3Q9BZD2 475 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 ARNT2Q9HBZ2 717 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 FAM60AQ9NP50 221 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 CASS4Q9NQ75 786 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 AMFRQ9UKV5 643 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 PTRH2Q9Y3E5 179 aaKnown RBP14.03□□□□□ -0.16
SDC1-204ENST00000429035 MAP4K5Q9Y4K4 846 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 USP9XQ93008 2570 aaPredicted RBP14.02□□□□□ -0.16
SDC1-204ENST00000429035 ANKRD12Q6UB98 2062 aa14.02□□□□□ -0.16
SDC1-204ENST00000429035 A1L4Q6 167 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 ISM1B1AKI9 464 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 QSOX1O00391 747 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 LIN7AO14910 233 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 AP2A2O94973 939 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 AP2A1O95782 977 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 FTCDO95954 541 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 CHRM5P08912 532 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 CBSLP0DN79 551 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 CBSP35520 551 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 NSG1P42857 185 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 MRPL49Q13405 166 aaKnown RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 ITIH4Q14624 930 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 INPP5JQ15735 1006 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 ZNF658BQ4V348 819 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 C4orf17Q53FE4 359 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 KCTD11Q693B1 232 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 RAD9BQ6WBX8 426 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 PPP1R21Q6ZMI0 780 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 UNC5AQ6ZN44 842 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 MRGPREQ86SM8 312 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 TAX1BP1Q86VP1 789 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 ZNF655Q8N720 491 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 OR52K1Q8NGK4 314 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 CALR3Q96L12 384 aaKnown RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 PSMG3-AS1Q96PY0 264 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 PANX2Q96RD6 677 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 C17orf62Q9BQA9 187 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 LACRTQ9GZZ8 138 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 SPRTNQ9H040 489 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 MLXIPLQ9NP71 852 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 SPHK1Q9NYA1 384 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 IFT80Q9P2H3 777 aaPredicted RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 DHCR7Q9UBM7 475 aaKnown RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 REXO2Q9Y3B8 237 aaKnown RBP14.02□□□□□ -0.17
SDC1-204ENST00000429035 PCDHGB7Q9Y5F8 929 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 PCM1Q15154 2024 aa14.02□□□□□ -0.17
SDC1-204ENST00000429035 USP9YO00507 2555 aaPredicted RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 CCDC162PA2VCL2 907 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 PEX12O00623 359 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 ZSCAN9O15535 394 aaPredicted RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 HCRTR1O43613 425 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 CEACAM4O75871 244 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 GAS8O95995 478 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 GSTM1P09488 218 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 OR56A5P0C7T3 313 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 MSL3P1P0C860 447 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 FOXN2P32314 431 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 FOXL2P58012 376 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 GSTM4Q03013 218 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 ZIC1Q15915 447 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 PAPD7Q5XG87 772 aaKnown RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 FAM20CQ8IXL6 584 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 TBC1D21Q8IYX1 336 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 RBMXL3Q8N7X1 1067 aaKnown RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 CLEC1AQ8NC01 280 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 SSC4DQ8WTU2 575 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 TCTN2Q96GX1 697 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 OR2A14Q96R47 310 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 C19orf43Q9BQ61 176 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 DPH2Q9BQC3 489 aaPredicted RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 DHRS4Q9BTZ2 278 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 PLEKHB1Q9UF11 243 aaPredicted RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 CIDEBQ9UHD4 219 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 CDYLQ9Y232 598 aa14.01□□□□□ -0.17
SDC1-204ENST00000429035 R3HDM2Q9Y2K5 976 aaKnown RBP14.01□□□□□ -0.17
SDC1-204ENST00000429035 E7EVH7 732 aa14□□□□□ -0.17
SDC1-204ENST00000429035 PSMD3O43242 534 aa14□□□□□ -0.17
SDC1-204ENST00000429035 KDM1AO60341 852 aa14□□□□□ -0.17
SDC1-204ENST00000429035 CTSBP07858 339 aa14□□□□□ -0.17
SDC1-204ENST00000429035 ZNF75DP51815 510 aa14□□□□□ -0.17
SDC1-204ENST00000429035 CYP2A13Q16696 494 aa14□□□□□ -0.17
SDC1-204ENST00000429035 VWA5B1Q5TIE3 1220 aa14□□□□□ -0.17
SDC1-204ENST00000429035 ZNF385CQ66K41 422 aaPredicted RBP14□□□□□ -0.17
SDC1-204ENST00000429035 AFTPHQ6ULP2 937 aa14□□□□□ -0.17
SDC1-204ENST00000429035 KLHDC8BQ8IXV7 354 aa14□□□□□ -0.17
SDC1-204ENST00000429035 C2orf73Q8N5S3 287 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 255.3 ms