RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RASAL1O95294 804 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 UMODP07911 640 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 PIM1P11309 404 aaPredicted RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 ITGAXP20702 1163 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 CCNCP24863 283 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 AKT1P31749 480 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 KIR3DL1P43629 444 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 TDGF1P3P51864 188 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 NIPAL4Q0D2K0 466 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 MFAP5Q13361 173 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 PPP2R5EQ16537 467 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 RBBP7Q16576 425 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 IFI16Q16666 785 aaKnown RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 LONRF2Q1L5Z9 754 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ATP13A5Q4VNC0 1218 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 LDLRAP1Q5SW96 308 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 FNBP1LQ5T0N5 605 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 METRNLQ641Q3 311 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ZNF385CQ66K41 422 aaPredicted RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 ALG1LQ6GMV1 187 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 FAM83HQ6ZRV2 1179 aaPredicted RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 CDHR3Q6ZTQ4 885 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 TMC3Q7Z5M5 1100 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ZNF655Q8N720 491 aaPredicted RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 NIPA2Q8N8Q9 360 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ARRDC2Q8TBH0 407 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 EID2BQ96D98 161 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 MAGED4Q96JG8 741 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 CALR3Q96L12 384 aaKnown RBP10.7□□□□□ -0.7
VPS53-207ENST00000570510 TMUB1Q9BVT8 246 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 BPIFA1Q9NP55 256 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 UVRAGQ9P2Y5 699 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 INTUQ9ULD6 942 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 ZNF711Q9Y462 761 aa10.7□□□□□ -0.7
VPS53-207ENST00000570510 C2orf74A8MZ97 194 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 ZSCAN9O15535 394 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 MT-CYBP00156 380 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 HLA-DQB2P05538 268 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 POLBP06746 335 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 PVRP15151 417 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 MSH3P20585 1137 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 SSR1P43307 286 aaKnown RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 TNNT3P45378 269 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 FOXL2P58012 376 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 CSNK1G2P78368 415 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 IHHQ14623 411 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 PCSK7Q16549 785 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 SLC18A3Q16572 532 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 ZNF324BQ6AW86 544 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 ALKBH5Q6P6C2 394 aaKnown RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 CYP4V2Q6ZWL3 525 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 TMEM200AQ86VY9 491 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 RASGEF1AQ8N9B8 481 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 ACVR1CQ8NER5 493 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 SPDYE1Q8NFV5 336 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 DNAJB8Q8NHS0 232 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS53-207ENST00000570510 MRFAP1L1Q96HT8 127 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 FERD3LQ96RJ6 166 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 SRPK1Q96SB4 655 aaKnown RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 REPIN1Q9BWE0 567 aaKnown RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 SPRTNQ9H040 489 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 MRM3Q9HC36 420 aaKnown RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 SEMA3GQ9NS98 782 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 NFKBIL1Q9UBC1 381 aaPredicted RBP10.69□□□□□ -0.7
VPS53-207ENST00000570510 SPTBP11277 2137 aa10.69□□□□□ -0.7
VPS53-207ENST00000570510 CNTRLQ7Z7A1 2325 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 FAM221AA4D161 298 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 KLHL33A6NCF5 533 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 MGAT4DA6NG13 374 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 TMEM200CA6NKL6 621 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 PMPCBO75439 489 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 MLYCDO95822 493 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 CYP1A2P05177 515 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 RARAP10276 462 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 PYGMP11217 842 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 MX2P20592 715 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 CTSCP53634 463 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 ADORA2A-AS1P86434 159 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 GALNT2Q10471 571 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 TCEAL1Q15170 157 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 ASTE1Q2TB18 679 aaPredicted RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 DEFB110Q30KQ9 67 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 ZDHHC20Q5W0Z9 365 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 E4F1Q66K89 784 aaPredicted RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 MRPL14Q6P1L8 145 aaKnown RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 TLDC1Q6P9B6 456 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 DET1Q7L5Y6 550 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 DENND1AQ8TEH3 1009 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 CA5BP1Q8WTZ4 195 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 MAML1Q92585 1016 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 DLG3Q92796 817 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 RBM41Q96IZ5 413 aaKnown RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 ZNF830Q96NB3 372 aaPredicted RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 TAAR6Q96RI8 345 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 TRIM7Q9C029 511 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 PLA2G3Q9NZ20 509 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 ABI3Q9P2A4 366 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 IP6K2Q9UHH9 426 aa10.68□□□□□ -0.7
VPS53-207ENST00000570510 NENFQ9UMX5 172 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms