RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GALNT6Q8NCL4 622 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 MCUQ8NE86 351 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PPHLN1Q8NEY8 458 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 NLGN4YQ8NFZ3 816 aaPredicted RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 ELMO1Q92556 727 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 LPGAT1Q92604 370 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 EXTL1Q92935 676 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 ZNF501Q96CX3 271 aaPredicted RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 SERPINB12Q96P63 405 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 TEFMQ96QE5 360 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 WDR83Q9BRX9 315 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 ZMYND15Q9H091 742 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 FAM60AQ9NP50 221 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 HOMER3Q9NSC5 361 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 CATSPERZQ9NTU4 200 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 CIDEBQ9UHD4 219 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PLAGL1Q9UM63 463 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 BTRCQ9Y297 605 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PCM1Q15154 2024 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 HEATR5BQ9P2D3 2071 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 GOLGA8MH3BSY2 632 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 PGRMC1O00264 195 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 CES2O00748 559 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 PRICKLE3O43900 615 aaPredicted RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 PHF2O75151 1096 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 BANF1O75531 89 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 KIAA0754O94854 1291 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 GSTM1P09488 218 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 NDUFS1P28331 727 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 OAS2P29728 719 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 STAT5AP42229 794 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 PRAMEP78395 509 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 GSTM4Q03013 218 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 MAP7Q14244 749 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 IL11RAQ14626 422 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 GSE1Q14687 1217 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 TBR1Q16650 682 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 CCSMST1Q4G0I0 132 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.33□□□□□ -0.76
CD44-227ENST00000528086 MSS51Q4VC12 460 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 FASTKD1Q53R41 847 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 DNTTIP2Q5QJE6 756 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 RNASEH2BQ5TBB1 312 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 PAPD7Q5XG87 772 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 ZNF549Q6P9A3 640 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 TMEM135Q86UB9 458 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 OOSP2Q86WS3 158 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 IGDCC3Q8IVU1 814 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 C17orf53Q8N3J3 647 aaPredicted RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 LINC01555Q8NAE3 123 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 LSM14AQ8ND56 463 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 LCN9Q8WX39 176 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 UBXN4Q92575 508 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 LRRC45Q96CN5 670 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 WBP1Q96G27 269 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 PWWP2AQ96N64 755 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 TRAPPC9Q96Q05 1148 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 OR2A14Q96R47 310 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 CD180Q99467 661 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 SLC30A3Q99726 388 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 CARD6Q9BX69 1037 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 KLHL25Q9H0H3 589 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 DDX47Q9H0S4 455 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 MVB12BQ9H7P6 319 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 BFARQ9NZS9 450 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 RUVBL2Q9Y230 463 aaKnown RBP10.33□□□□□ -0.76
CD44-227ENST00000528086 NFS1Q9Y697 457 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 COLEC10Q9Y6Z7 277 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 ANKRD12Q6UB98 2062 aa10.33□□□□□ -0.76
CD44-227ENST00000528086 TK2O00142 265 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 PRMT5O14744 637 aaPredicted RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 NIPSNAP2O75323 286 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 S1PR4O95977 384 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 FTH1P02794 183 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 NTRK1P04629 796 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 OR56A5P0C7T3 313 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 UGT2B7P16662 529 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 RPS3P23396 243 aaKnown RBP eCLIP10.32□□□□□ -0.76
CD44-227ENST00000528086 YBX1P67809 324 aaKnown RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 HSD11B2P80365 405 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 TIAL1Q01085 375 aaKnown RBP eCLIP10.32□□□□□ -0.76
CD44-227ENST00000528086 ABHD18Q0P651 414 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 GPS2Q13227 327 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 TUBB3Q13509 450 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 ANKRD20A4Q4UJ75 823 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 LYPLAL1Q5VWZ2 237 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 KIAA0930Q6ICG6 404 aaPredicted RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 FAM199XQ6PEV8 388 aaPredicted RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 ZNF517Q6ZMY9 492 aaPredicted RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 AMIGO1Q86WK6 493 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 KMT5CQ86Y97 462 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 RASGRP3Q8IV61 690 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 DENND6AQ8IWF6 608 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 IL22RA1Q8N6P7 574 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 SIDT2Q8NBJ9 832 aaKnown RBP10.32□□□□□ -0.76
CD44-227ENST00000528086 OR1L3Q8NH93 324 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 OR5K2Q8NHB8 316 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 GIMAP7Q8NHV1 300 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 DENND1AQ8TEH3 1009 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms