RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PLEKHG6Q3KR16 790 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 DGKKQ5KSL6 1271 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 TPRG1LQ5T0D9 272 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ZBTB2Q8N680 514 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 CPSF7Q8N684 471 aaKnown RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 OR7G1Q8NGA0 311 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 OR10G6Q8NH81 332 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ESAMQ96AP7 390 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 PEBP4Q96S96 227 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 HBEGFQ99075 208 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 NLNQ9BYT8 704 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 TP63Q9H3D4 680 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 CRTAC1Q9NQ79 661 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 UBR2Q8IWV8 1755 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 PIPSLA2A3N6 862 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 FAM220BPB1ANY3 271 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SLC28A1O00337 649 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SCAMP1O15126 338 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 RSL1D1O76021 490 aaKnown RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 CDK14O94921 469 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 PGLSO95336 258 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SLC1A2P43004 574 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 POLD2P49005 469 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SLC11A1P49279 550 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 CLK3P49761 638 aaKnown RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ABATP80404 500 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SLC10A7Q0GE19 358 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 EIF3MQ7L2H7 374 aaKnown RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 SIDT2Q8NBJ9 832 aaKnown RBP12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ABHD11Q8NFV4 315 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 NTAN1Q96AB6 310 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ATG10Q9H0Y0 220 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 MFSD1Q9H3U5 465 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 ZNF358Q9NW07 568 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 NAV1Q8NEY1 1877 aa12.93□□□□□ -0.34
TCOF1-213ENST00000514442 H3BN98 237 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 QSOX1O00391 747 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CAPN15O75808 1086 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 AMD1P17707 334 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 VARSP26640 1264 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 NR4A2P43354 598 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CYP4F2P78329 520 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CYP4F3Q08477 520 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 PRKG2Q13237 762 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 RBM20Q5T481 1227 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TXNDC8Q6A555 127 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 POP5Q969H6 163 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 FIZ1Q96SL8 496 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 FEM1AQ9BSK4 669 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 DCSTAMPQ9H295 470 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 KRCC1Q9NPI7 259 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SMOXQ9NWM0 555 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 KCNE2Q9Y6J6 123 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 H0YC42 278 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 FUCA1P04066 466 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CLTBP09497 229 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CD36P16671 472 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 IGFBP5P24593 272 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 OPRL1P41146 370 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SEC13P55735 322 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ASZ1Q8WWH4 475 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 USP7Q93009 1102 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 POLR3BQ9NW08 1133 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SOCS2O14508 198 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ARPC2O15144 300 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TOP3BO95985 862 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 IRF9Q00978 393 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ALFQ53S48 1182 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ANKRD26P1Q6NSI1 321 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SERPINA9Q86WD7 417 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ANKLE1Q8NAG6 615 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TRPV3Q8NET8 790 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 OR13C4Q8NGS5 318 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 C2orf15Q8WU43 125 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 HEXDCQ8WVB3 486 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 KCTD13Q8WZ19 329 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SOHLH2Q9NX45 425 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 GTF2A1LQ9UNN4 478 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TRBV23OR9-2A0A075B6M9 112 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 GSAPA4D1B5 854 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 MYADML2A6NDP7 307 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 OR6C70A6NIJ9 312 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 J3KR12 359 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SGTAO43765 313 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SLC22A3O75751 556 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 RASAL1O95294 804 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 NFATC1O95644 943 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 CHRNB1P11230 501 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 HOXB6P17509 224 aaKnown RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 EDNRBP24530 442 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ELK4P28324 431 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 NTSP30990 170 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 SOX4Q06945 474 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-213ENST00000514442 INCA1Q0VD86 236 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 C1orf220Q5T0J3 134 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 PLEKHM3Q6ZWE6 761 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 ZNF597Q96LX8 424 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TSSK3Q96PN8 268 aa12.92□□□□□ -0.34
TCOF1-213ENST00000514442 TMEM209Q96SK2 561 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms