RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SLC22A15Q8IZD6 547 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TEX9Q8N6V9 391 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 OR56A4Q8NGH8 313 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 C10orf82Q8WW14 230 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 GLMNQ92990 594 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 CLDN23Q96B33 292 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 RHBDF1Q96CC6 855 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 MED8Q96G25 268 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 NOL11Q9H8H0 719 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 OPTCQ9UBM4 332 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 HEY2Q9UBP5 337 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PCTPQ9UKL6 214 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 SLC17A4Q9Y2C5 497 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TDRKHQ9Y2W6 561 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 SPAG17Q6Q759 2223 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 C17orf113A0A1B0GUU1 675 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 CCDC189A1A4V9 331 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PRAMEF26H0Y7S4 382 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 STX16-NPEPL1H3BU86 382 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 GFYI3L273 518 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 STX16O14662 325 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 AXIN1O15169 862 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TAPBPO15533 448 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 KLK8O60259 260 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 STK16O75716 305 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 RASGRP1O95267 797 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 MATN4O95460 622 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 IGLV3-19P01714 112 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 JUNP05412 331 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 GSTM1P09488 218 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 SLC35G4P0C7Q5 338 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 KELP23276 732 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TEAD1P28347 426 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 EPHA3P29320 983 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PRDX3P30048 256 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 RPS9P46781 194 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 PLOD1Q02809 727 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 GSTM4Q03013 218 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 LCP2Q13094 533 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 GTF2H2Q13888 395 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 NFATC4Q14934 902 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 USP39Q53GS9 565 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 PYCR3Q53H96 274 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 NXNQ6DKJ4 435 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 SULT1C3Q6IMI6 304 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 GTF2H2CQ6P1K8 395 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 SLC30A9Q6PML9 568 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 MTDHQ86UE4 582 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 ALYREFQ86V81 257 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 TMEFF1Q8IYR6 380 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 C2orf73Q8N5S3 287 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 LMNTD1Q8N9Z9 388 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TMEM145Q8NBT3 493 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PDPRQ8NCN5 879 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PPFIBP2Q8ND30 876 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 DENND6BQ8NEG7 585 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 OR13H1Q8NG92 308 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 OR52B6Q8NGF0 335 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 ASB12Q8WXK4 309 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 OR1E3Q8WZA6 343 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TFGQ92734 400 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 LINC00615Q96LM1 132 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 WDR92Q96MX6 357 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 LRRC37BQ96QE4 947 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 KCNA7Q96RP8 456 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TRMOQ9BU70 441 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 CD244Q9BZW8 370 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 WDR55Q9H6Y2 383 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 IPPKQ9H8X2 491 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 ZBTB26Q9HCK0 441 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 IMP3Q9NV31 184 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 KCNK4Q9NYG8 393 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 KLQ9UEF7 1012 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PTBP2Q9UKA9 531 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 PLAGL1Q9UM63 463 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 G3BP2Q9UN86 482 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 TRAF6Q9Y4K3 522 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 TNPO3Q9Y5L0 923 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 TRBV23OR9-2A0A075B6M9 112 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 A0A1W2PPC4 97 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 OR52A4PA6NMU1 304 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 MEI4A8MW99 385 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 GPR89AB7ZAQ6 455 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 E9PBE3 544 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 E2F3O00716 465 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 HDAC3O15379 428 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 KLHL41O60662 606 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 PSIP1O75475 530 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 WDR47O94967 919 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 SLC16A8O95907 504 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 RPS17P08708 135 aaKnown RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 ENO2P09104 434 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 GPR89BP0CG08 455 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 THEGLP0DJG4 465 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 AK4P27144 223 aaPredicted RBP3.62□□□□□ -1.83
RTN4-208ENST00000404909 SERPINB5P36952 375 aa3.62□□□□□ -1.83
RTN4-208ENST00000404909 CCR3P51677 355 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms