RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CLCA4Q14CN2 919 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 HHATQ5VTY9 493 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 UNC5DQ6UXZ4 953 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 ARFGAP2Q8N6H7 521 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 SUMF1Q8NBK3 374 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 PHC3Q8NDX5 983 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 RHEBL1Q8TAI7 183 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 HIST1H2AHQ96KK5 128 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 FERD3LQ96RJ6 166 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 HIST1H2AJQ99878 128 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 H2AFJQ9BTM1 129 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 PARVBQ9HBI1 364 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 UCKL1Q9NWZ5 548 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 CD274Q9NZQ7 290 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 SCHIP1Q9P0W5 487 aaPredicted RBP17.63■□□□□ 0.41
SDC1-203ENST00000403076 MID2Q9UJV3 735 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 PCOLCE2Q9UKZ9 415 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 EMCNQ9ULC0 261 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 A0A1B0GTQ1 180 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 NEMP2A6NFY4 417 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 OR52A4PA6NMU1 304 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 SYCE1LA8MT33 242 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 LMO7DNF2Z398 122 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 GFYI3L273 518 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 YKT6O15498 198 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 SMIM24O75264 130 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 EML2O95834 649 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 S100BP04271 92 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 BDKRB1P46663 353 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 KCNC1P48547 511 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 SLC18A1P54219 525 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 RPE65Q16518 533 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 DEFB133Q30KQ1 61 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TCEAL6Q6IPX3 200 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 FAM76AQ8TAV0 307 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 MDM1Q8TC05 714 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 MAGEC3Q8TD91 643 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 ZDHHC1Q8WTX9 485 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TCEAL3Q969E4 200 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 CXorf40BQ96DE9 158 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 EGFL8Q99944 293 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 SLC12A9Q9BXP2 914 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TRIT1Q9H3H1 467 aaKnown RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 MLXIPLQ9NP71 852 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 HEBP2Q9Y5Z4 205 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 CSNK1G3Q9Y6M4 447 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 NCF1BA6NI72 391 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 OR5K4A6NMS3 321 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 NCF1CA8MVU1 366 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 ARHGEF33A8MVX0 844 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 B4DGG1 531 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 C1orf105O95561 183 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 GUCA1CO95843 209 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 ENO2P09104 434 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 MYL2P10916 166 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 NCF1P14598 390 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 ENGP17813 658 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 EPHA8P29322 1005 aaPredicted RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 RPIAP49247 311 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 ATP1A2P50993 1020 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 PHKG1Q16816 387 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 DUS1LQ6P1R4 473 aaKnown RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 IYDQ6PHW0 289 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 SBSNQ6UWP8 590 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TRIM48Q8IWZ4 208 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 OR5AR1Q8NGP9 310 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 DLG3Q92796 817 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 ATOH8Q96SQ7 321 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 KCNH6Q9H252 994 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 CNOT10Q9H9A5 744 aaKnown RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 IL21RQ9HBE5 538 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 FAM53CQ9NYF3 392 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 NCDNQ9UBB6 729 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 PDE10AQ9Y233 779 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TDRKHQ9Y2W6 561 aaKnown RBP17.62■□□□□ 0.41
SDC1-203ENST00000403076 OARD1Q9Y530 152 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 COLEC10Q9Y6Z7 277 aa17.62■□□□□ 0.41
SDC1-203ENST00000403076 TP53BP1Q12888 1972 aaPredicted RBP17.61■□□□□ 0.41
SDC1-203ENST00000403076 A6NCN8 305 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 UBXN8O00124 270 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 FFAR2O15552 330 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 TPBGLP0DKB5 382 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 MTHFD1P11586 935 aaKnown RBP17.61■□□□□ 0.41
SDC1-203ENST00000403076 GFAPP14136 432 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 CPA3P15088 417 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 CCT8P50990 548 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 PRKG2Q13237 762 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 SHBQ15464 509 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 TGFBIQ15582 683 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 PLA2G2CQ5R387 149 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 TAX1BP1Q86VP1 789 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 DCUN1D3Q8IWE4 304 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 TBC1D21Q8IYX1 336 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 OR2I1PQ8NGU4 316 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 RDH11Q8TC12 318 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 DENND1AQ8TEH3 1009 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 PATE1Q8WXA2 126 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 RAD51AP1Q96B01 352 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 MVB12BQ9H7P6 319 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 ARL15Q9NXU5 204 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms