RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 CSKP41240 450 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 GRIA4P48058 902 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 NKX3-2P78367 333 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CLCQ05315 142 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 SERINC3Q13530 473 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 STK11Q15831 433 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 LSM12Q3MHD2 195 aaKnown RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 SLC8B1Q6J4K2 584 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CCBE1Q6UXH8 406 aaPredicted RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 SERPINA13PQ6UXR4 307 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CMC1Q7Z7K0 106 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 TRIM69Q86WT6 500 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 STX19Q8N4C7 294 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CAMKK1Q8N5S9 505 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 DNAJB14Q8TBM8 379 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 STAG3L4Q8TBR4 150 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 MRPL57Q9BQC6 102 aaKnown RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 YTHDF1Q9BYJ9 559 aaKnown RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 MKRN2Q9H000 416 aaKnown RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 KCNK13Q9HB14 408 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CPNE5Q9HCH3 593 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 CASS4Q9NQ75 786 aa5.6□□□□□ -1.51
RFFL-202ENST00000394597 FCF1Q9Y324 198 aaKnown RBP5.6□□□□□ -1.51
RFFL-202ENST00000394597 SLC7A4O43246 635 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PRAMEF11O60813 436 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 RSL1D1O76021 490 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 FKBP9O95302 570 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 DGKAP23743 735 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ATP5F1P24539 256 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 LIMK2P53671 638 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 IL18R1Q13478 541 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 TBRG1Q3YBR2 411 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 SLC9B1Q4ZJI4 515 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PIK3R6Q5UE93 754 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 GARNL3Q5VVW2 1013 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ANKS6Q68DC2 871 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PDE12Q6L8Q7 609 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 ANKRD26P1Q6NSI1 321 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ERICH5Q6P6B1 374 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ARHGAP36Q6ZRI8 547 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 CHSY3Q70JA7 882 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 CAND1Q86VP6 1230 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 TCEAL8Q8IYN2 117 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ITFG1Q8TB96 612 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 RDH11Q8TC12 318 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 KHSRPQ92945 711 aaKnown RBP eCLIP5.59□□□□□ -1.51
RFFL-202ENST00000394597 IGSF8Q969P0 613 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 RTP4Q96DX8 246 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PHOX2BQ99453 314 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 AIFM2Q9BRQ8 373 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 UQCC2Q9BRT2 126 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ACE2Q9BYF1 805 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 TRIM45Q9H8W5 580 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 CAB39LQ9H9S4 337 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PAK6Q9NQU5 681 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 TDP1Q9NUW8 608 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 IMPAD1Q9NX62 359 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 CRNNQ9UBG3 495 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 ING4Q9UNL4 249 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 MTF2Q9Y483 593 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 DICER1Q9UPY3 1922 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 CAPN14A8MX76 684 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ZNF99A8MXY4 864 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 BTN3A1O00481 513 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 FADS2O95864 444 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 RB1P06400 928 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 THRBP10828 461 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PSKH1P11801 424 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ZNF37AP17032 561 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 RRM2P31350 389 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 CHRNA4P43681 627 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 CSTF3Q12996 717 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 MBTPS1Q14703 1052 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 TAZQ16635 292 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 LRRC26Q2I0M4 334 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 PITRM1Q5JRX3 1037 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 TMEM198Q66K66 360 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 KIAA0930Q6ICG6 404 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 ZNF773Q6PK81 442 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ZNF517Q6ZMY9 492 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 PIWIL3Q7Z3Z3 882 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 RALGPS2Q86X27 583 aaPredicted RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 PACRGLQ8N7B6 248 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ATG16L2Q8NAA4 619 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 NARS2Q96I59 477 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 ASB2Q96Q27 587 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 RTP3Q9BQQ7 232 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ZCCHC2Q9C0B9 1178 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 TNKS2Q9H2K2 1166 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 ABCB8Q9NUT2 735 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 MTMR10Q9NXD2 777 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 HCSTQ9UBK5 93 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 LIMD1Q9UGP4 676 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.59□□□□□ -1.51
RFFL-202ENST00000394597 HSPB11Q9Y547 144 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 COPG1Q9Y678 874 aaKnown RBP5.59□□□□□ -1.51
RFFL-202ENST00000394597 ATP6AP2A0A1C7CYW4 349 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 FAM159BA6NKW6 160 aa5.59□□□□□ -1.51
RFFL-202ENST00000394597 B8ZZF3 427 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms