RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CYP4F2P78329 520 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 EIF5AL1Q6IS14 154 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CACNB4O00305 520 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 VNN1O95497 513 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 GOT2P00505 430 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PFKPQ01813 784 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 EMX2Q04743 252 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 KIAA1614Q5VZ46 1190 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 EFHD2Q96C19 240 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CYP2S1Q96SQ9 504 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 FPR1P21462 350 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 VARSP26640 1264 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 STXBP1P61764 594 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 TAF13Q15543 124 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 SMU1Q2TAY7 513 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 USP30Q70CQ3 517 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 RBM12BQ8IXT5 1001 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 BTAF1O14981 1849 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 K7EPI3 171 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 RPS14P62263 151 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CHST9Q7L1S5 443 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 DET1Q7L5Y6 550 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 RAVER1Q8IY67 606 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 LIX1Q8N485 282 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 FNDC8Q8TC99 324 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PSKH2Q96QS6 385 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 TMEM27Q9HBJ8 222 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ILVBLA1L0T0 632 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SH3PXD2BA1X283 911 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 KLHL33A6NCF5 533 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 NME6O75414 186 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CCR10P46092 362 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ABHD18Q0P651 414 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CBLBQ13191 982 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 BTG3Q14201 252 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 STEAP4Q687X5 459 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 C2CD4AQ8NCU7 369 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 BHMTQ93088 406 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 RTP4Q96DX8 246 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 C12orf66Q96MD2 445 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF382Q96SR6 550 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SPATA7Q9P0W8 599 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 EI24O14681 340 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 TACR2P21452 398 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 F8A1P23610 371 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ARHGDIBP52566 201 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 GDF10P55107 478 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 EEF1DP3Q658K8 133 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 BORAQ6PGQ7 559 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SUN5Q8TC36 379 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 C11orf24Q96F05 449 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC30A2Q9BRI3 323 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF879B4DU55 563 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 H3BM21 787 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 OR10H2O60403 315 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MNDAP41218 407 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CLEC6AQ6EIG7 209 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 OR10A6Q8NH74 314 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 OR2B2Q9GZK3 357 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 EEDO75530 441 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ZBTB48P10074 688 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SUZ12Q15022 739 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SNAP47Q5SQN1 464 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 QSOX2Q6ZRP7 698 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PM20D2Q8IYS1 436 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MTFMTQ96DP5 389 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 COL21A1Q96P44 957 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 TLE6Q9H808 572 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 C2orf71A6NGG8 1288 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 FFAR2O15552 330 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 RPL4P36578 427 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CAPZA1P52907 286 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 LSM3P62310 102 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CLDN10P78369 228 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PRAMEF18Q5VWM3 479 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 KLRG1Q96E93 195 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 RANBP9Q96S59 729 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 TOR4AQ9NXH8 423 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ERVW-1Q9UQF0 538 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 B4GALT5O43286 388 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ADAM15Q13444 863 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PLEKHG4Q58EX7 1191 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MEDAGQ5VYS4 303 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CILP2Q8IUL8 1156 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 NCSTNQ92542 709 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 AZIN2Q96A70 460 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 APOLD1Q96LR9 279 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 CCDC106Q9BWC9 280 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PDGFDQ9GZP0 370 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 STOX2Q9P2F5 926 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 NKX1-2Q9UD57 310 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 A0A1W2PQH9 124 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 COL6A1P12109 1028 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MAPK10P53779 464 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF33BQ06732 778 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 BRAT1Q6PJG6 821 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SCGB3A2Q96PL1 93 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PI15O43692 258 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 SSR2P43308 183 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 RGS8P57771 180 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms