RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FFAR4Q5NUL3 377 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ACSM2BQ68CK6 577 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GAGE2AQ6NT46 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PWWP2BQ6NUJ5 590 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TSSK4Q6SA08 328 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 Q6ZRP5 223 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 C1orf122Q6ZSJ8 110 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 IL17RELQ6ZVW7 336 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PLEKHM3Q6ZWE6 761 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 R3HCC1LQ7Z5L2 792 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ISCA2Q86U28 154 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GPR180Q86V85 440 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PIGZQ86VD9 579 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ZNF354CQ86Y25 554 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PTOV1Q86YD1 416 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PLD3Q8IV08 490 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SMC5Q8IY18 1101 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HACE1Q8IYU2 909 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CEP57L1Q8IYX8 460 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CPXCR1Q8N123 301 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 DCLK2Q8N568 766 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 WDTC1Q8N5D0 677 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GBGT1Q8N5D6 347 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CPSF7Q8N684 471 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 SLC5A8Q8N695 610 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CCDC185Q8N715 623 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 EMC1Q8N766 993 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FRMD1Q8N878 549 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 NAXEQ8NCW5 288 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PRSS33Q8NF86 280 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TDRD7Q8NHU6 1098 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ETNPPLQ8TBG4 499 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HM13Q8TCT9 377 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MORC4Q8TE76 937 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SGCDQ92629 289 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GTF3AQ92664 365 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ARHGEF2Q92974 986 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 EVI5LQ96CN4 794 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ERLEC1Q96DZ1 483 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SAAL1Q96ER3 474 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PRMT6Q96LA8 375 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 CNOT6LQ96LI5 555 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 TMEM68Q96MH6 324 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SCLT1Q96NL6 688 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FNBP1Q96RU3 617 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SMC6Q96SB8 1091 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GAD1Q99259 594 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PSD2Q9BQI7 771 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 RTP3Q9BQQ7 232 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SYT15Q9BQS2 421 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SRSF8Q9BRL6 282 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 HGH1Q9BTY7 390 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ABHD6Q9BV23 337 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 VN1R1Q9GZP7 353 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 LAT2Q9GZY6 243 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SIL1Q9H173 461 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PLK3Q9H4B4 646 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 BICC1Q9H694 974 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 PRKRIP1Q9H875 184 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 JMJD4Q9H9V9 463 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 VEZTQ9HBM0 779 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 Q9N2K0 584 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TAB2Q9NYJ8 693 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 COQ3Q9NZJ6 369 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 RHCGQ9UBD6 479 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GAGE2DQ9UEU5 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FBXL17Q9UF56 701 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 LIMA1Q9UHB6 759 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 MTUS1Q9ULD2 1270 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ARHGAP26Q9UNA1 814 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GTF2A1LQ9UNN4 478 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 KCNJ14Q9UNX9 436 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SLC6A5Q9Y345 797 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SEC23IPQ9Y6Y8 1000 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ZNF541Q9H0D2 1346 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 STK36Q9NRP7 1315 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TDRD9Q8NDG6 1382 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-4A0A075B6R2 117 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 IGHV3OR16-10A0A075B7F0 116 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GIMAP1-GIMAP5A0A087WTJ2 511 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 A0A087WW49 117 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 A0A087X0M5 115 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 IGLV9-49A0A0B4J1Y8 123 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 LOC101059948A0A1B0GTJ6 334 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 A0A1B0GX30 115 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PN81 502 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TTC36A6NLP5 189 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DUXAA6NLW8 204 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR6C76A6NM76 312 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SRRM5B3KS81 715 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 E9PI62 339 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 H0YIN7 160 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TMEM189-UBE2V1I3L0A0 370 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DNM1LO00429 736 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZNF197O14709 1029 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CLIC2O15247 247 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ATP6V0E1O15342 81 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TMCC2O75069 709 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NDUFS3O75489 264 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TRMUO75648 421 aaKnown RBP0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms