RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KCNK6Q9Y257 313 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 GSTK1Q9Y2Q3 226 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 C2orf78A6NCI8 922 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 EFCAB10A6NFE3 127 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 KERAO60938 352 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 RPL10P27635 214 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 IL12BP29460 328 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 RGS8P57771 180 aaPredicted RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 KCNJ2P63252 427 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 IRF9Q00978 393 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 SLBPQ14493 270 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP3-204ENST00000540797 C16orf72Q14CZ0 275 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 RTL4Q6ZR62 310 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ATP6V1C2Q8NEY4 427 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 HIC2Q96JB3 615 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 JSRP1Q96MG2 331 aaPredicted RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 NECTIN4Q96NY8 510 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 TUBGCP5Q96RT8 1024 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 C9JVG2 144 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZNF783Q6ZMS7 281 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZNF730Q6ZMV8 503 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 YTHDF3Q7Z739 585 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 ANKRD46Q86W74 232 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 KLHDC7BQ96G42 594 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 BORCS6Q96GS4 357 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZFRQ96KR1 1074 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 EFCAB11Q9BUY7 163 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 RACGAP1Q9H0H5 632 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 FETUBQ9UGM5 382 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 CA3P07451 260 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ZNF37AP17032 561 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 GKP32189 559 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 LMAN2Q12907 356 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 TIMM50Q3ZCQ8 353 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 CLVS1Q8IUQ0 354 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 BANPQ8N9N5 519 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 C11orf65Q8NCR3 313 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 SETD7Q8WTS6 366 aaKnown RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 USP29Q9HBJ7 922 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 HCN3Q9P1Z3 774 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 MAFFQ9ULX9 164 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ERVK-11Q9UQG0 969 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ELOVL7A1L3X0 281 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 PDPK1O15530 556 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 TGM5O43548 720 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ENTPD5O75356 428 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 KRT36O76013 467 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 AP1S2P56377 157 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 RPS14P62263 151 aaKnown RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 KCNJ11Q14654 390 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 CEP78Q5JTW2 689 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 RASGRP3Q8IV61 690 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 PQLC3Q8N755 202 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 TFGQ92734 400 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 MYDGFQ969H8 173 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 PMEPA1Q969W9 287 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 CALML5Q9NZT1 146 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 A0A0G2JN53 185 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 TCRBV21S2A2A0A5A6 115 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 SAP18O00422 153 aaKnown RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 PTGESO14684 152 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 MSX2P35548 267 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 TAS2R50P59544 299 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 TRIM71Q2Q1W2 868 aaKnown RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 STMN3Q9NZ72 180 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 KCTD3Q9Y597 815 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 A0A0J9YVX5 310 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 MEIS3P2A8K0S8 358 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 SAGP10523 405 aaPredicted RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 AGXTP21549 392 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 PSMD4P55036 377 aaKnown RBP13.86□□□□□ -0.19
USP3-204ENST00000540797 RALGDSQ12967 914 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ZBTB6Q15916 424 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 RFX4Q33E94 735 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 MBOAT1Q6ZNC8 495 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 ABHD13Q7L211 337 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 GPRIN1Q7Z2K8 1008 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 OR10H5Q8NGA6 315 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 SLC2A13Q96QE2 648 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 FEM1AQ9BSK4 669 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 OGDHLQ9ULD0 1010 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 SH3GLB1Q9Y371 365 aa13.86□□□□□ -0.19
USP3-204ENST00000540797 C9J4A7 227 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 LEFTY1O75610 366 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 OAZ2O95190 189 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CTSAP10619 480 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ANPEPP15144 967 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 RYKP34925 604 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 HERVK_113P63132 956 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 NFKB2Q00653 900 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ISLR2Q6UXK2 745 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ERN2Q76MJ5 926 aaKnown RBP13.85□□□□□ -0.19
USP3-204ENST00000540797 MRPL10Q7Z7H8 261 aaKnown RBP13.85□□□□□ -0.19
USP3-204ENST00000540797 PEX5LQ8IYB4 626 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 TBC1D21Q8IYX1 336 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 SMPDL3AQ92484 453 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ZNF641Q96N77 438 aaPredicted RBP13.85□□□□□ -0.19
USP3-204ENST00000540797 ERVK-6Q9BXR3 956 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CYP8B1Q9UNU6 501 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms