RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ARL15Q9NXU5 204 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 ZDHHC2Q9UIJ5 367 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 MOSPD1Q9UJG1 213 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 DMTF1Q9Y222 760 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CA5BQ9Y2D0 317 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 PIKFYVEQ9Y2I7 2098 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 SLCO1B7G3V0H7 640 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 PRAMEF26H0Y7S4 382 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 DCNP07585 359 aaKnown RBP20.56■□□□□ 0.88
VPS28-208ENST00000527797 KELP23276 732 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 NUDT1P36639 197 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CXCL12P48061 93 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 AP1S2P56377 157 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CLCQ05315 142 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 NFATC4Q14934 902 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 SPATS2Q86XZ4 545 aaKnown RBP20.56■□□□□ 0.88
VPS28-208ENST00000527797 KIRREL3Q8IZU9 778 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 ZNF483Q8TF39 744 aaPredicted RBP20.56■□□□□ 0.88
VPS28-208ENST00000527797 ESAMQ96AP7 390 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 RHBDF1Q96CC6 855 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 IER2Q9BTL4 223 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 EBF2Q9HAK2 575 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 WWOXQ9NZC7 414 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 SLC23A2Q9UGH3 650 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 TOR1BO14657 336 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 CATP04040 527 aaKnown RBP20.55■□□□□ 0.88
VPS28-208ENST00000527797 HTR1BP28222 390 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 PXNP49023 591 aaPredicted RBP20.55■□□□□ 0.88
VPS28-208ENST00000527797 PFN3P60673 137 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 SH2D4BQ5SQS7 431 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 XKR5Q6UX68 686 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 GCNT7Q6ZNI0 430 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 FAM83HQ6ZRV2 1179 aaPredicted RBP20.55■□□□□ 0.88
VPS28-208ENST00000527797 GALNT13Q8IUC8 556 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 TCAIMQ8N3R3 496 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 FRMD1Q8N878 549 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 TRPC4APQ8TEL6 797 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 BIRC7Q96CA5 298 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 NSUN5Q96P11 429 aaKnown RBP20.55■□□□□ 0.88
VPS28-208ENST00000527797 TM7SF3Q9NS93 570 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 VTI1BQ9UEU0 232 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 EIF2B4Q9UI10 523 aaKnown RBP20.55■□□□□ 0.88
VPS28-208ENST00000527797 PCTPQ9UKL6 214 aa20.55■□□□□ 0.88
VPS28-208ENST00000527797 NUMA1Q14980 2115 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 H0Y8X5 98 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 TAPBPO15533 448 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 NDUFS2O75306 463 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 FUCA1P04066 466 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 ALOX15P16050 662 aaPredicted RBP20.54■□□□□ 0.88
VPS28-208ENST00000527797 TSPAN8P19075 237 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 YPEL5P62699 121 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 LCP2Q13094 533 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 C18orf21Q32NC0 220 aaPredicted RBP20.54■□□□□ 0.88
VPS28-208ENST00000527797 PYCR3Q53H96 274 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 CHST15Q7LFX5 561 aaPredicted RBP20.54■□□□□ 0.88
VPS28-208ENST00000527797 AFAP1L2Q8N4X5 818 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 TMEM145Q8NBT3 493 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 OR56A4Q8NGH8 313 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 UBTD2Q8WUN7 234 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 SCARF2Q96GP6 870 aaPredicted RBP20.54■□□□□ 0.88
VPS28-208ENST00000527797 WDR92Q96MX6 357 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 TIMM29Q9BSF4 260 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 WWP1Q9H0M0 922 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 SEMA4BQ9NPR2 832 aaPredicted RBP20.54■□□□□ 0.88
VPS28-208ENST00000527797 SUFUQ9UMX1 484 aa20.54■□□□□ 0.88
VPS28-208ENST00000527797 ARHGEF33A8MVX0 844 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 MATN2O00339 956 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 E2F3O00716 465 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 UBFD1O14562 309 aaKnown RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 KCNJ13O60928 360 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 MLYCDO95822 493 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 METTL2BQ6P1Q9 378 aaKnown RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 ENPP7Q6UWV6 458 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 FAM160A2Q8N612 972 aaPredicted RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 FAR2Q96K12 515 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 RMDN2Q96LZ7 410 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 HGH1Q9BTY7 390 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 CD244Q9BZW8 370 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 OR52A5Q9H2C5 316 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 STN1Q9H668 368 aaKnown RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 MID1IP1Q9NPA3 183 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 DNAJC28Q9NX36 388 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 GPSM3Q9Y4H4 160 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 ASB1Q9Y576 335 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 HDAC3O15379 428 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 ACP5P13686 325 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 MAGEA9P43362 315 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 HSPA7P48741 367 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 HNMTP50135 292 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 THOP1P52888 689 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 SH3BP2P78314 561 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 DMPKQ09013 629 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 METRNLQ641Q3 311 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 TTC23LQ6PF05 361 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 C6orf89Q6UWU4 347 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 MBOAT1Q6ZNC8 495 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 TMEM79Q9BSE2 394 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 FGF22Q9HCT0 170 aa20.53■□□□□ 0.88
VPS28-208ENST00000527797 MRPL40Q9NQ50 206 aaKnown RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 KLC4Q9NSK0 619 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms