RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SPTBN1Q01082 2364 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 KRT87PA6NCN2 255 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 NPC1O15118 1278 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 SERPINI2O75830 405 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ST13P50502 369 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ARSEP51690 589 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 RAP1GDS1P52306 607 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PLK1P53350 603 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TUBA4AP68366 448 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZBTB16Q05516 673 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 LIN52Q52LA3 116 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF600Q6ZNG1 722 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 GCNT7Q6ZNI0 430 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 OR2W6PQ8NHA6 318 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 EXD1Q8NHP7 514 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 AHCYL2Q96HN2 611 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZIM3Q96PE6 472 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 APOOQ9BUR5 198 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 VIPAS39Q9H9C1 493 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TBC1D23Q9NUY8 699 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 NKX1-2Q9UD57 310 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PKP3Q9Y446 797 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM47E-STBD1D6RA91 191 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PGLSO95336 258 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TRIM16O95361 564 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 G0S2P27469 103 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ADSLP30566 484 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PTDSS1P48651 473 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ARHGDIAP52565 204 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 FOXM1Q08050 763 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 GALNT2Q10471 571 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TMEM259Q4ZIN3 620 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TTMPQ5BVD1 217 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 SIGIRRQ6IA17 410 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 SLCO6A1Q86UG4 719 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC25A45Q8N413 288 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 NETO1Q8TDF5 533 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 NCSTNQ92542 709 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF566Q969W8 418 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 GRAMD1AQ96CP6 724 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF778Q96MU6 729 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZSCAN5AQ9BUG6 496 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 C1QTNF7Q9BXJ2 289 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 TDRD1Q9BXT4 1180 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 SACM1LQ9NTJ5 587 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 RAB21Q9UL25 225 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 GPR34Q9UPC5 381 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PCDHA3Q9Y5H8 950 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 ZFHX4Q86UP3 3567 aa7.76□□□□□ -1.17
LIMCH1-219ENST00000514096 PMS2P1A4D2B8 440 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 IQCF5A8MTL0 148 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PJA2O43164 708 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PSTPIP1O43586 416 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CD68P34810 354 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 AP1S1P61966 158 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 ASPHQ12797 758 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 BRAT1Q6PJG6 821 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 USP30Q70CQ3 517 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TRPM8Q7Z2W7 1104 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 EFL1Q7Z2Z2 1120 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 LILRA3Q8N6C8 439 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 GPR26Q8NDV2 337 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TMIEQ8NEW7 156 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 OR7G1Q8NGA0 311 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CEP76Q8TAP6 659 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 RAB3IPQ96QF0 476 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CIB1Q99828 191 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TEX12Q9BXU0 123 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM192AQ9GZU8 254 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SP140LQ9H930 580 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 MLXIPLQ9NP71 852 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PHPT1Q9NRX4 125 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TLK1Q9UKI8 766 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC30A1Q9Y6M5 507 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 NEMP2A6NFY4 417 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 HNRNPCL2B2RXH8 293 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 FANCGO15287 622 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 YY2O15391 372 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 AQP9O43315 295 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TSPAN6O43657 245 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 HNRNPCL1O60812 293 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 FGF1P05230 155 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CYP2A6P11509 494 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 IDO1P14902 403 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 RASSF2P50749 326 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PLTPP55058 493 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PRAMEP78395 509 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 ILF3Q12906 894 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CHRNA6Q15825 494 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SIRPB2Q5JXA9 342 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 ALG1LQ6GMV1 187 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 ARCQ7LC44 396 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 MAPK15Q8TD08 544 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 APOLD1Q96LR9 279 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 DCUN1D5Q9BTE7 237 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PDFQ9HBH1 243 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PRDM8Q9NQV8 689 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SNX8Q9Y5X2 465 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CCDC163A0A0D9SF12 145 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms