RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 K7EPI3 171 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TP73O15350 636 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 MTPNP58546 118 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 MERTKQ12866 999 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SLC9A6Q92581 669 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 FCGR1BQ92637 280 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 RFKQ969G6 155 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF354BQ96LW1 612 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 COPS4Q9BT78 406 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 NECTIN3Q9NQS3 549 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 KDM3BQ7LBC6 1761 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 RBM47A0AV96 593 aaKnown RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ADAMTS3O15072 1205 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 C9P02748 559 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 RLN1P04808 185 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 NRLP54845 237 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CBX3Q13185 183 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SUZ12Q15022 739 aaKnown RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TNFAIP8L3Q5GJ75 292 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CIR1Q86X95 450 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 AHI1Q8N157 1196 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 C2orf73Q8N5S3 287 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CANT1Q8WVQ1 401 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TNKS2Q9H2K2 1166 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 EBF2Q9HAK2 575 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CALML5Q9NZT1 146 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 MTRRQ9UBK8 725 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 RWDD3Q9Y3V2 267 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CCNB2O95067 398 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 XRCC1P18887 633 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 AZGP1P25311 298 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 HERVK_113P63132 956 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 DAG1Q14118 895 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 SYPL2Q5VXT5 272 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF433Q8N7K0 673 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 SIDT2Q8NBJ9 832 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 OR5K1Q8NHB7 308 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 C8orf48Q96LL4 319 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 ERVK-6Q9BXR3 956 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 BCL2L14Q9BZR8 327 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 CXorf49A8MYA2 514 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 AGRPO00253 132 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 NME6O75414 186 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 LGR5O75473 907 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 FESP07332 822 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PRKCZQ05513 592 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PAQR3Q6TCH7 311 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 RNF19BQ6ZMZ0 732 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 TMC8Q8IU68 726 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 HID1Q8IV36 788 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 ART5Q96L15 291 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PHF12Q96QT6 1004 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 BRINP2Q9C0B6 783 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 MRTO4Q9UKD2 239 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 HMGB3O15347 200 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PI15O43692 258 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 SNX4O95219 450 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 ANXA8P13928 327 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 TIE1P35590 1138 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 YAP1P46937 504 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 RFTN1Q14699 578 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 OR10H5Q8NGA6 315 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 KAT2AQ92830 837 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PIWIL1Q96J94 861 aaKnown RBP11.25□□□□□ -0.61
PTPRF-203ENST00000372407 FCRL4Q96PJ5 515 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 MAN2B2Q9Y2E5 1009 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 TEX264Q9Y6I9 313 aa11.25□□□□□ -0.61
PTPRF-203ENST00000372407 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SMPD1P17405 629 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CD247P20963 164 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 HCAR3P49019 387 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PRR5P85299 388 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CYP4F8P98187 520 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CHST9Q7L1S5 443 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PACRGLQ8N7B6 248 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 DNASE1L2Q92874 299 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TOP1MTQ969P6 601 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GTPBP3Q969Y2 492 aaKnown RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 OR52B2Q96RD2 323 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TMEM209Q96SK2 561 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 HEPHQ9BQS7 1158 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 OSBPL2Q9H1P3 480 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 IL1RAPQ9NPH3 570 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TRPV5Q9NQA5 729 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 FBXL21Q9UKT6 434 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SLC45A1Q9Y2W3 748 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 XIRP1Q702N8 1843 aaKnown RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 NHSQ6T4R5 1651 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF536O15090 1300 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 RIIAD1A6NNX1 92 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PEX10O60683 326 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SLC18A2Q05940 514 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 MYBPC3Q14896 1274 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GPR33Q49SQ1 333 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CLEC20AQ6ZU45 233 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GPR135Q8IZ08 494 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SCAMP5Q8TAC9 235 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TWNKQ96RR1 684 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 FCF1Q9Y324 198 aaKnown RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CPQQ9Y646 472 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms