RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF554Q86TJ5 538 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 TMEM178AQ8NBL3 297 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 PCYOX1LQ8NBM8 494 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 TBC1D16Q8TBP0 767 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 ZFAND2BQ8WV99 257 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 DACH2Q96NX9 599 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 MYADMQ96S97 322 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 DDOQ99489 341 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 ABHD6Q9BV23 337 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 PLK3Q9H4B4 646 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 MTMR6Q9Y217 621 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 SPIN1Q9Y657 262 aaPredicted RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 IGLV7-46A0A075B6I9 117 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 PRSS51A0A1B0GVH4 220 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 FRMD3A2A2Y4 597 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 MSGN1A6NI15 193 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 E9PI62 339 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 TO15178 435 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 PI15O43692 258 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 SRSF10O75494 262 aaKnown RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 CCNDBP1O95273 360 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 GH2P01242 217 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 ACTN1P12814 892 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 TMEM11P17152 192 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 CDH2P19022 906 aaPredicted RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 AZU1P20160 251 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 PSMA4P25789 261 aaKnown RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 RPS18P62269 152 aaKnown RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 TEAD2Q15562 447 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 ZSCAN23Q3MJ62 389 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 TCTEX1D4Q5JR98 221 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 GRTP1Q5TC63 336 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 DOK6Q6PKX4 331 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 PXKQ7Z7A4 578 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 GALNT5Q7Z7M9 940 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 PIGZQ86VD9 579 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 CPSF7Q8N684 471 aaKnown RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 MAPKAPK5-AS1Q8N8E1 139 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 AMER3Q8N944 861 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 OR1J1Q8NGS3 322 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 SGK494Q96LW2 274 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 CMAHPQ9Y471 501 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 LYVE1Q9Y5Y7 322 aa3.56□□□□□ -1.84
CD44-239ENST00000639002 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.56□□□□□ -1.84
CD44-239ENST00000639002 ASTN2O75129 1339 aaPredicted RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 NDUFS4O43181 175 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 CDC123O75794 336 aaPredicted RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 GPIP06744 558 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 HSPA1AP0DMV8 641 aaKnown RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 HSPA1BP0DMV9 641 aaKnown RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 SHC1P29353 583 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 CDR2Q01850 454 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 G3BP1Q13283 466 aaKnown RBP eCLIP3.55□□□□□ -1.84
CD44-239ENST00000639002 ADALQ6DHV7 355 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 IL27RAQ6UWB1 636 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 LINGO4Q6UY18 593 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 NGEFQ8N5V2 710 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 KBTBD8Q8NFY9 601 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 OR4C3Q8NH37 302 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 TDRD7Q8NHU6 1098 aaKnown RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 SYT15Q9BQS2 421 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 TRAF4Q9BUZ4 470 aaPredicted RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 MUC13Q9H3R2 512 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 A4GALTQ9NPC4 353 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 SLC7A10Q9NS82 523 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 FLRT3Q9NZU0 649 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 PNMA2Q9UL42 364 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 CORO1CQ9ULV4 474 aaPredicted RBP3.55□□□□□ -1.84
CD44-239ENST00000639002 NENFQ9UMX5 172 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 RIPK3Q9Y572 518 aa3.55□□□□□ -1.84
CD44-239ENST00000639002 MEX3AA1L020 520 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 ELOVL7A1L3X0 281 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 PIGNO95427 931 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 DDX58O95786 925 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 EFNA1P20827 205 aaPredicted RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 CAMPP49913 170 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 IKQ13123 557 aaPredicted RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 HNRNPDQ14103 355 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 RRS1Q15050 365 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 DLG2Q15700 870 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 KLHL35Q6PF15 583 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 SCYL3Q8IZE3 742 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 FAM81BQ96LP2 452 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 C7orf26Q96N11 449 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 AGAP3Q96P47 875 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 ZNF300Q96RE9 604 aaPredicted RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 SRSF8Q9BRL6 282 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 TRIM51Q9BSJ1 452 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 PPIL3Q9H2H8 161 aaKnown RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 ARRDC1-AS1Q9H2J1 176 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 HHATLQ9HCP6 504 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 CCDC177Q9NQR7 707 aaPredicted RBP3.54□□□□□ -1.84
CD44-239ENST00000639002 GTF2A1LQ9UNN4 478 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 PCDHGA5Q9Y5G8 931 aa3.54□□□□□ -1.84
CD44-239ENST00000639002 LOC101059948A0A1B0GTJ6 334 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 A0A1W2PRB8 838 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 MED19A0JLT2 244 aaPredicted RBP3.53□□□□□ -1.84
CD44-239ENST00000639002 HS6ST1O60243 411 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 RNASEH2AO75792 299 aaKnown RBP3.53□□□□□ -1.84
CD44-239ENST00000639002 SRPRAP08240 638 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms