RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 KRT6AP02538 564 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 KRT6BP04259 564 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 RPN2P04844 631 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 ABHD2P08910 425 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 ATXN1LP0C7T5 689 aaKnown RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF30P17039 623 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 MSX2P35548 267 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 KRT6CP48668 564 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 PEX6Q13608 980 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 IRF4Q15306 451 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 CYP2A13Q16696 494 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 TUBB8Q3ZCM7 444 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 LDLRAP1Q5SW96 308 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 FAAH2Q6GMR7 532 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM92Q6UXU6 159 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 CYP2U1Q7Z449 544 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 RNF168Q8IYW5 571 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 DCAKDQ8WVC6 231 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 ANKRD49Q8WVL7 239 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF419Q96HQ0 510 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 MRGPRX1Q96LB2 322 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 SLC6A18Q96N87 628 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 NSUN5Q96P11 429 aaKnown RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 MACROD1Q9BQ69 325 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 MRPL57Q9BQC6 102 aaKnown RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 THUMPD3Q9BV44 507 aaKnown RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 EPN3Q9H201 632 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 PPCSQ9HAB8 311 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 RAD18Q9NS91 495 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 NLE1Q9NVX2 485 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 THAP10Q9P2Z0 257 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-209ENST00000560637 PCDHB1Q9Y5F3 818 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 MGAMO43451 1857 aa5.35□□□□□ -1.55
VPS13C-209ENST00000560637 LCTP09848 1927 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF236Q9UL36 1845 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 A0A087X1B8 175 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 RGSL1A5PLK6 1076 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PSMD12O00232 456 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PLIN3O60664 434 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CBX6O95503 412 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 APBB3O95704 486 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TGFB1P01137 390 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TNFP01375 233 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 C9P02748 559 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ALDOAP04075 364 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 IFNA16P05015 189 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 HGFP14210 728 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 BMP8BP34820 402 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 RPL34P49207 117 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 NUDT2P50583 147 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 RAB8AP61006 207 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 SEMA3AQ14563 771 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CDKN3Q16667 212 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PTCHD3Q3KNS1 767 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 LRIT3Q3SXY7 679 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CCDC153Q494R4 210 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 C9orf64Q5T6V5 341 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 FAM180BQ6P0A1 224 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TRIM73Q86UV7 250 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CRIPAKQ8N1N5 446 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 OR13J1Q8NGT2 312 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 SLCO2A1Q92959 643 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 WDR92Q96MX6 357 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 THTPAQ9BU02 230 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM168Q9H0V1 697 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TCF7L2Q9NQB0 619 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 COPG2Q9UBF2 871 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 HAO1Q9UJM8 370 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TRIM33Q9UPN9 1127 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PLLPQ9Y342 182 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 FAM159BA6NKW6 160 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 B2RBV5 119 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 H7BY64 318 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TM9SF1O15321 606 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 HOXC11O43248 304 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 GMFGO60234 142 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CDC123O75794 336 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 S1PR4O95977 384 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CAPN1P07384 714 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 COL9A1P20849 921 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 HNRNPA2B1P22626 353 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TCEA1P23193 301 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ITGB7P26010 798 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ABCE1P61221 599 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 GABPB1Q06547 395 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 LRRC36Q1X8D7 754 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 WSCD2Q2TBF2 565 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 GPR33Q49SQ1 333 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ATP6AP1LQ52LC2 224 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 WDR45BQ5MNZ6 344 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 GPRIN3Q6ZVF9 776 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 SLC22A9Q8IVM8 553 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF781Q8N8C0 355 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CCL4L1Q8NHW4 92 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 MAGEC3Q8TD91 643 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 SLC26A7Q8TE54 656 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PTCD2Q8WV60 388 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 RAD51AP1Q96B01 352 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 LRGUKQ96M69 825 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 PRAP1Q96NZ9 151 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms