RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 RCOR2Q8IZ40 523 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 ENDOVQ8N8Q3 282 aaKnown RBP11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 TMEM102Q8N9M5 508 aaPredicted RBP11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 ACVR1CQ8NER5 493 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 OR4K2Q8NGD2 314 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 HM13Q8TCT9 377 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 HEXDCQ8WVB3 486 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 ULK4Q96C45 1275 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 DCUN1D1Q96GG9 259 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 RBM41Q96IZ5 413 aaKnown RBP11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 RMDN2Q96LZ7 410 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 FERMT1Q9BQL6 677 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 GBA3Q9H227 469 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 TCFL5Q9UL49 500 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 SNX7Q9UNH6 387 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 AAR2Q9Y312 384 aaKnown RBP11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 ALG6Q9Y672 507 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 ARL5AQ9Y689 179 aa11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 SPENQ96T58 3664 aaKnown RBP11.68□□□□□ -0.54
CBX3P4-202ENST00000540428 SLC9B1P1A6NJY1 282 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CFAP99D6REC4 459 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 F5H423 210 aaPredicted RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 APOC4-APOC2K7ER74 178 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 MAP3K7O43318 606 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 TMEM63AO94886 807 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CRTAMO95727 393 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 AGTP01019 485 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 APOC2P02655 101 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 POLR2CP19387 275 aaPredicted RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CD151P48509 253 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 VAV2P52735 878 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 RRADP55042 308 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 XIAPP98170 497 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 ABRQ12979 859 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 KRT33BQ14525 404 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 PTPRCAPQ14761 206 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 LLGL1Q15334 1064 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 ZNF789Q5FWF6 425 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 BBS12Q6ZW61 710 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 MED25Q71SY5 747 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 VSTM4Q8IW00 320 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CFAP206Q8IYR0 622 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 GLIS1Q8NBF1 620 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 OR4E2Q8NGC2 313 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 SSC4DQ8WTU2 575 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 LCN9Q8WX39 176 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CLIP3Q96DZ5 547 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 PPM1MQ96MI6 270 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 DPH2Q9BQC3 489 aaPredicted RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 FICDQ9BVA6 458 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 TLR10Q9BXR5 811 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 PITPNM3Q9BZ71 974 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 SRMSQ9H3Y6 488 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 TFB2MQ9H5Q4 396 aaKnown RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 PCMTD2Q9NV79 361 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 PLEKHB1Q9UF11 243 aaPredicted RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 FKBPLQ9UIM3 349 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 CRLS1Q9UJA2 301 aa11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 USP9XQ93008 2570 aaPredicted RBP11.67□□□□□ -0.54
CBX3P4-202ENST00000540428 IFRD1O00458 451 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 POLBP06746 335 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 CAPN1P07384 714 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 HBQ1P09105 142 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 ATP1B2P14415 290 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 ITGALP20701 1170 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 RBL1P28749 1068 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PRDX3P30048 256 aaKnown RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 ADRA1AP35348 466 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 HADHAP40939 763 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PREPP48147 710 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 ARCN1P48444 511 aaKnown RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 INPP5JQ15735 1006 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PRAMEF17Q5VTA0 474 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 LCN10Q6JVE6 187 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 JMJD6Q6NYC1 403 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 FBXO38Q6PIJ6 1188 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 FAM198BQ6UWH4 519 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 SNX20Q7Z614 316 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 CNGA4Q8IV77 575 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 CCDC50Q8IVM0 306 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 SYTL1Q8IYJ3 562 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 NXPE1Q8N323 547 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 LILRA3Q8N6C8 439 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 FDCSPQ8NFU4 85 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 OR1L3Q8NH93 324 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PNPLA2Q96AD5 504 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 HAUS1Q96CS2 278 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PPP1R2P1Q96PQ5 205 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 COPS8Q99627 209 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 SMAD5Q99717 465 aaKnown RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 GORASP1Q9BQQ3 440 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 DHRS4Q9BTZ2 278 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 SLC29A3Q9BZD2 475 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 MVB12BQ9H7P6 319 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 COG4Q9H9E3 785 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 ACTR5Q9H9F9 607 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 FEZ2Q9UHY8 353 aaPredicted RBP11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 SERTAD3Q9UJW9 196 aa11.66□□□□□ -0.54
CBX3P4-202ENST00000540428 PADI2Q9Y2J8 665 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms