RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 C6orf89Q6UWU4 347 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SPATA31D4Q6ZUB0 917 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 OR10G6Q8NH81 332 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 PLD4Q96BZ4 506 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 PIGUQ9H490 435 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 DHRS7Q9Y394 339 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 RICTORQ6R327 1708 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 NEMP2A6NFY4 417 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 MTHFD1P11586 935 aaKnown RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 AOC1P19801 751 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 TMEM110Q86TL2 294 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 PACRGLQ8N7B6 248 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 NEK6Q9HC98 313 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SNED1Q8TER0 1413 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 OR2AG2A6NM03 316 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 ABATP80404 500 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 IFI44LQ53G44 452 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SYPL2Q5VXT5 272 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 OLFML2AQ68BL7 652 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SLC9A4Q6AI14 798 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 OGFOD2Q6N063 350 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 CLEC20AQ6ZU45 233 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 TMEM192Q8IY95 271 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 TMEM199Q8N511 208 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 EXOSC8Q96B26 276 aaKnown RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 CD84Q9UIB8 345 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 FAUP35544 74 aaKnown RBP16.21■□□□□ 0.18
COL7A1-210ENST00000487017 STARP49675 285 aa16.21■□□□□ 0.18
COL7A1-210ENST00000487017 FCHO2Q0JRZ9 810 aa16.21■□□□□ 0.18
COL7A1-210ENST00000487017 KLF1Q13351 362 aaPredicted RBP16.21■□□□□ 0.18
COL7A1-210ENST00000487017 C2orf73Q8N5S3 287 aaPredicted RBP16.21■□□□□ 0.18
COL7A1-210ENST00000487017 GLIS1Q8NBF1 620 aa16.21■□□□□ 0.18
COL7A1-210ENST00000487017 FCGR1BQ92637 280 aa16.21■□□□□ 0.18
COL7A1-210ENST00000487017 OAS3Q9Y6K5 1087 aaKnown RBP16.21■□□□□ 0.18
COL7A1-210ENST00000487017 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 RPLP0P05388 317 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 S100A1P23297 94 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 YAP1P46937 504 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 MSS51Q4VC12 460 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 LCN1P1Q5VSP4 162 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 PGBD2Q6P3X8 592 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 PHYKPLQ8IUZ5 450 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 PIK3R3Q92569 461 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 SLC38A4Q969I6 547 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF354BQ96LW1 612 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 GIN1Q9NXP7 522 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 MAN2B2Q9Y2E5 1009 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CXCL14O95715 111 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 GLUD1P00367 558 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CYP4F8P98187 520 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 GJD3Q8N144 294 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 TOP1MTQ969P6 601 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 GTPBP3Q969Y2 492 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CCDC177Q9NQR7 707 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 A8MT66 165 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 PGRP06401 933 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 MAPK12P53778 367 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 DAG1Q14118 895 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 LARS2Q15031 903 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 MEIOBQ8N635 442 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF248Q8NDW4 579 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 BTBD19C9JJ37 291 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 HCAR3P49019 387 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 NADK2Q4G0N4 442 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 KLHDC10Q6PID8 442 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 ERI1Q8IV48 349 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CRYBG2Q8N1P7 616 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 C11orf24Q96F05 449 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D14Q9P2M4 693 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 LSM1O15116 133 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 IRAK2O43187 625 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 GNRH1P01148 92 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 HLA-DQB2P05538 268 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 OGDHQ02218 1023 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CARTPTQ16568 116 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 RNASE12Q5GAN4 147 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 ANO7Q6IWH7 933 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CXorf57Q6NSI4 855 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 CHST9Q7L1S5 443 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 LAPTM4BQ86VI4 370 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 LRRC58Q96CX6 371 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 TMEM209Q96SK2 561 aa16.2■□□□□ 0.18
COL7A1-210ENST00000487017 RUVBL1Q9Y265 456 aaKnown RBP16.2■□□□□ 0.18
COL7A1-210ENST00000487017 RBM48Q5RL73 367 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SLC51AQ86UW1 340 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 NEK7Q8TDX7 302 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 C8orf48Q96LL4 319 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF570Q96NI8 536 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 COPS4Q9BT78 406 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 MRPS33Q9Y291 106 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 KNDC1Q76NI1 1749 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ARPC2O15144 300 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SAGP10523 405 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 CKMT2P17540 419 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 NSG1P42857 185 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 FAAH2Q6GMR7 532 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 EPGNQ6UW88 154 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 FRMD7Q6ZUT3 714 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 HID1Q8IV36 788 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms