RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SLC10A4Q96EP9 437 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 MED30Q96HR3 178 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 SPATA33Q96N06 139 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 DDX28Q9NUL7 540 aaKnown RBP6.69□□□□□ -1.34
VPS39-202ENST00000348544 NDFIP2Q9NV92 336 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 AKT3Q9Y243 479 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 TPRKBQ9Y3C4 175 aa6.69□□□□□ -1.34
VPS39-202ENST00000348544 NYNRINQ9P2P1 1898 aaKnown RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 PDZK1P1A8MUH7 402 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 H0Y626 953 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 M0R082 166 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ENPP3O14638 875 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ANKRD28O15084 1053 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SLC7A4O43246 635 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZW10O43264 779 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RGS10O43665 173 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CRCPO75575 148 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TRIM16O95361 564 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CRYZL1O95825 349 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 DNTTP04053 509 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RPS17P08708 135 aaKnown RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 INSRRP14616 1297 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 UGT2B10P36537 528 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 KRT6CP48668 564 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CLK1P49759 484 aaKnown RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 MAP3K7CLP57077 242 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MRPS15P82914 257 aaKnown RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 SEMA3AQ14563 771 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MFSD10Q14728 455 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZFP69Q49AA0 526 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 FBXO47Q5MNV8 452 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 NBPF12Q5TAG4 269 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 CAPN13Q6MZZ7 669 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 Q6ZSR9 355 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CEP68Q76N32 757 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 GALNT7Q86SF2 657 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 C11orf74Q86VG3 221 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CCDC71Q8IV32 467 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 GALNT12Q8IXK2 581 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 EID3Q8N140 333 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 FNDC5Q8NAU1 212 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZNF540Q8NDQ6 660 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 OR6P1Q8NGX9 317 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 OR10A6Q8NH74 314 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RNF170Q96K19 258 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TTYH2Q9BSA4 534 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SLC39A8Q9C0K1 460 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CLPBQ9H078 707 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RIBC2Q9H4K1 309 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 GOLGA2P5Q9HBQ8 144 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZNF277Q9NRM2 450 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 NPAP1Q9NZP6 1156 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CRNNQ9UBG3 495 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 ASB1Q9Y576 335 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PCDHGB6Q9Y5F9 930 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RALGAPA2Q2PPJ7 1873 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 GRXCR2A6NFK2 248 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TBKBP1A7MCY6 615 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SUPT3HB4E1H0 165 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 H3BQ06 376 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 ARNTLO00327 626 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PIRO00625 290 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 AIREO43918 545 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 USP17L7P0C7H9 530 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 G6PDP11413 515 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 IGFBP6P24592 240 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 IGFBP5P24593 272 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 FMO4P31512 558 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 DAPP51397 102 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CXCR4P61073 352 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TUBA1BP68363 451 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZNF45Q02386 682 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MVKQ03426 396 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 YWHAHQ04917 246 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZNF33AQ06730 810 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PWP1Q13610 501 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PTPRCAPQ14761 206 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PON2Q15165 354 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PLEKHG6Q3KR16 790 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CARD16Q5EG05 197 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 WDR45BQ5MNZ6 344 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ARTNQ5T4W7 220 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ZNF544Q6NX49 715 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TUBA1AQ71U36 451 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 DET1Q7L5Y6 550 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 BHLHA9Q7RTU4 235 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 LIMS2Q7Z4I7 341 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 BPHLQ86WA6 291 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 ADHFE1Q8IWW8 467 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MSRB3Q8IXL7 192 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 FAM126BQ8IXS8 530 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PEX5LQ8IYB4 626 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MICU2Q8IYU8 434 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 C10orf111Q8N326 155 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SIMC1Q8NDZ2 872 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CHST13Q8NET6 341 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RHEBL1Q8TAI7 183 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SUN5Q8TC36 379 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 SLC38A4Q969I6 547 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms