RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 UBE2R2Q712K3 238 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-202ENST00000338045 TREML1Q86YW5 311 aa15.16■□□□□ 0.02
LIMS1-202ENST00000338045 OR56A4Q8NGH8 313 aa15.16■□□□□ 0.02
LIMS1-202ENST00000338045 RPLP0P6Q8NHW5 317 aa15.16■□□□□ 0.02
LIMS1-202ENST00000338045 PTCD3Q96EY7 689 aaKnown RBP15.16■□□□□ 0.02
LIMS1-202ENST00000338045 LENG8Q96PV6 779 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-202ENST00000338045 PARVBQ9HBI1 364 aa15.16■□□□□ 0.02
LIMS1-202ENST00000338045 SEMA4BQ9NPR2 832 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-202ENST00000338045 GPR34Q9UPC5 381 aa15.16■□□□□ 0.02
LIMS1-202ENST00000338045 ANKRD12Q6UB98 2062 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 A0A1B0GTL3 188 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 AZIN1O14977 448 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 HNRNPCL1O60812 293 aaKnown RBP15.15■□□□□ 0.02
LIMS1-202ENST00000338045 ESRRBO95718 433 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 GUCA1CO95843 209 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 RPIAP49247 311 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 CDK3Q00526 305 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 MAP7D1Q3KQU3 841 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 TTC31Q49AM3 519 aaPredicted RBP15.15■□□□□ 0.02
LIMS1-202ENST00000338045 CLEC6AQ6EIG7 209 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 KBTBD6Q86V97 674 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 HEATR4Q86WZ0 1026 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF547Q8IVP9 402 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 TP53I13Q8NBR0 393 aaPredicted RBP15.15■□□□□ 0.02
LIMS1-202ENST00000338045 OR14C36Q8NHC7 312 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 GANCQ8TET4 914 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 TMEM159Q96B96 161 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 SIPA1Q96FS4 1042 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 NSL1Q96IY1 281 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 MRGPRX1Q96LB2 322 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF382Q96SR6 550 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 TMEM79Q9BSE2 394 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 HGH1Q9BTY7 390 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 PREBQ9HCU5 417 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 LNPEPQ9UIQ6 1025 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF225Q9UK10 706 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 MMP17Q9ULZ9 603 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 TRIM33Q9UPN9 1127 aa15.15■□□□□ 0.02
LIMS1-202ENST00000338045 GOLGA8QA0A0J9YX86 632 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 C17orf113A0A1B0GUU1 675 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 GOLGA8OA6NCC3 632 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 E9PBE3 544 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 GOLGA8NF8WBI6 632 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 KLHL41O60662 606 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ANXA5P08758 320 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ZNF8P17098 575 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 GGT5P36269 586 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TRIM23P36406 574 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 GTF2H3Q13889 308 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 UBAP2LQ14157 1087 aaKnown RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 C18orf21Q32NC0 220 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TTC23LQ6PF05 361 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TMEM92Q6UXU6 159 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 SLC22A15Q8IZD6 547 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ACTRT2Q8TDY3 377 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 SLC7A6OSQ96CW6 309 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 EGFL8Q99944 293 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TEX101Q9BY14 249 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 CD244Q9BZW8 370 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 FIS1Q9Y3D6 152 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 DNAJC15Q9Y5T4 150 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PRR5-ARHGAP8B1AHC4 643 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 LIN7AO14910 233 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 CHUKO15111 745 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PSIP1O75475 530 aaKnown RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 SKAP2O75563 359 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PCCBP05166 539 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 CALB2P22676 271 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 FOXA1P55317 472 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PKNOX1P55347 436 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 AP1S2P56377 157 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ARHGAP8P85298 464 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 SYTL3Q4VX76 610 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PTCRAQ6ISU1 281 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 NEK5Q6P3R8 708 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 XKR5Q6UX68 686 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 Q7L0L9 218 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 GOLGA7Q7Z5G4 137 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 SYVN1Q86TM6 617 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TRAPPC5Q8IUR0 188 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 LILRA3Q8N6C8 439 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 CEP70Q8NHQ1 597 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PPM1EQ8WY54 764 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 KLHL29Q96CT2 875 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 PPP1R36Q96LQ0 422 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 TRIM54Q9BYV2 358 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 LRMDAQ9H2I8 198 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ZNF385DQ9H6B1 395 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 MBNL1Q9NR56 388 aaKnown RBP15.14■□□□□ 0.01
LIMS1-202ENST00000338045 ST14Q9Y5Y6 855 aa15.14■□□□□ 0.01
LIMS1-202ENST00000338045 A0A1W2PQU0 124 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 LOC730098B7Z3J9 87 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 MYO1CO00159 1063 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 MAN2B1O00754 1011 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 RNGTTO60942 597 aaKnown RBP15.13■□□□□ 0.01
LIMS1-202ENST00000338045 PAK4O96013 591 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-202ENST00000338045 FOSL2P15408 326 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 CYP2A7P20853 494 aa15.13■□□□□ 0.01
LIMS1-202ENST00000338045 PRDX3P30048 256 aaKnown RBP15.13■□□□□ 0.01
LIMS1-202ENST00000338045 MAPK9P45984 424 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms