RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PYCARD-AS1I3L0S3 204 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 CD3EAPO15446 510 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 POP7O75817 140 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 HGFP14210 728 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 PGAM1P18669 254 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 SLC5A2P31639 672 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 INHBCP55103 352 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 MAZP56270 477 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 EIF3IQ13347 325 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 ITIH4Q14624 930 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 SEPT7Q16181 437 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 BCL7AQ4VC05 210 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 MSS51Q4VC12 460 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 HP1BP3Q5SSJ5 553 aaPredicted RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 DUPD1Q68J44 220 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 MRNIPQ6NTE8 343 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 CERS6Q6ZMG9 384 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 RAB11FIP2Q7L804 512 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 LDB1Q86U70 411 aaPredicted RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 AMZ2Q86W34 360 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 AGGF1Q8N302 714 aaeCLIP17.48■□□□□ 0.39
CLN3-247ENST00000636351 CFAP36Q96G28 342 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 SIGLEC10Q96LC7 697 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 LRRC1Q9BTT6 524 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 STRADBQ9C0K7 418 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 VPS37BQ9H9H4 285 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 IL1RAPL1Q9NZN1 696 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 MARCH4Q9P2E8 410 aaPredicted RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 SLC23A2Q9UGH3 650 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 CHMP2BQ9UQN3 213 aa17.48■□□□□ 0.39
CLN3-247ENST00000636351 ZFC3H1O60293 1989 aaKnown RBP17.48■□□□□ 0.39
CLN3-247ENST00000636351 IGLV3-16A0A075B6K0 115 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 USP1O94782 785 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 POLBP06746 335 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 SLC2A4P14672 509 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 ARNTP27540 789 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 NSG1P42857 185 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 TTPAP49638 278 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 THOC5Q13769 683 aaKnown RBP17.47■□□□□ 0.39
CLN3-247ENST00000636351 SEMA3AQ14563 771 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 LONRF1Q17RB8 773 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 C14orf28Q4W4Y0 310 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 SFTPA2Q8IWL1 248 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 MMGT1Q8N4V1 131 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-247ENST00000636351 NOA1Q8NC60 698 aaKnown RBP17.47■□□□□ 0.39
CLN3-247ENST00000636351 PATE1Q8WXA2 126 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 SGSM3Q96HU1 749 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 NAT9Q9BTE0 207 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 CARD6Q9BX69 1037 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 LRRN3Q9H3W5 708 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 C20orf96Q9NUD7 363 aaPredicted RBP17.47■□□□□ 0.39
CLN3-247ENST00000636351 TBC1D29Q9UFV1 150 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 ATXN7L1Q9ULK2 861 aaPredicted RBP17.47■□□□□ 0.39
CLN3-247ENST00000636351 PCDHGA7Q9Y5G6 932 aa17.47■□□□□ 0.39
CLN3-247ENST00000636351 TRBV23OR9-2A0A075B6M9 112 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 F8W8V4 182 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 TMX2-CTNND1H3BSU7 103 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 PFDN6O15212 129 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 EFSO43281 561 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 NOBOXO60393 691 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 OR1I1O60431 355 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 NDUFS3O75489 264 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 AP2A2O94973 939 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 PRLHRP49683 370 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 PDIA2Q13087 525 aaKnown RBP17.46■□□□□ 0.39
CLN3-247ENST00000636351 CRYMQ14894 314 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 TGIF1Q15583 401 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 KIF26BQ2KJY2 2108 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 PACS1Q6VY07 963 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 C11orf96Q7Z7L8 435 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 SDCCAG8Q86SQ7 713 aaPredicted RBP17.46■□□□□ 0.39
CLN3-247ENST00000636351 TMEM135Q86UB9 458 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 ANKMY2Q8IV38 441 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 CLDN19Q8N6F1 224 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 Q8N9G6 341 aaPredicted RBP17.46■□□□□ 0.39
CLN3-247ENST00000636351 GPR156Q8NFN8 814 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 OR6C4Q8NGE1 309 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 COL26A1Q96A83 441 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 EBNA1BP2Q99848 306 aaKnown RBP17.46■□□□□ 0.39
CLN3-247ENST00000636351 PRDM8Q9NQV8 689 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 GRHL1Q9NZI5 618 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 PISDQ9UG56 409 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 DNMT3AQ9Y6K1 912 aaPredicted RBP17.46■□□□□ 0.39
CLN3-247ENST00000636351 COL6A6A6NMZ7 2263 aa17.46■□□□□ 0.39
CLN3-247ENST00000636351 UBA6A0AVT1 1052 aaPredicted RBP17.45■□□□□ 0.38
CLN3-247ENST00000636351 ESYT3A0FGR9 886 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 MGAT4DA6NG13 374 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 RHPN2P1A8MT19 583 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 AGRPO00253 132 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 QSOX1O00391 747 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 TTC4O95801 387 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 OR56A5P0C7T3 313 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 JMJD7P0C870 316 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 IDSP22304 550 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 CCKBRP32239 447 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 ELK3P41970 407 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 ARCN1P48444 511 aaKnown RBP17.45■□□□□ 0.38
CLN3-247ENST00000636351 CLCNKAP51800 687 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 DRG2P55039 364 aaKnown RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms