RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 AKAP7Q9P0M2 348 aaPredicted RBP14.71□□□□□ -0.05
VPS39-210ENST00000568357 PYCARDQ9ULZ3 195 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 NEU2Q9Y3R4 380 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 KIF26BQ2KJY2 2108 aa14.71□□□□□ -0.06
VPS39-210ENST00000568357 C17orf113A0A1B0GUU1 675 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 KLHL33A6NCF5 533 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 C9orf172C9J069 976 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 PGRMC1O00264 195 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 PRAMEF10O60809 474 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 CSTF2P33240 577 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS39-210ENST00000568357 NPY2RP49146 381 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 GFERP55789 205 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 GPS1Q13098 491 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 CAPRIN2Q6IMN6 1127 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 CCDC137Q6PK04 289 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 NLRP9Q7RTR0 991 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 RBM12BQ8IXT5 1001 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 PPHLN1Q8NEY8 458 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 OR6P1Q8NGX9 317 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 OR4L1Q8NH43 312 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 JPH3Q8WXH2 748 aaPredicted RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 RSC1A1Q92681 617 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 PMEPA1Q969W9 287 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 NAP1L3Q99457 506 aaPredicted RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 CLMPQ9H6B4 373 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 IMP3Q9NV31 184 aaKnown RBP14.7□□□□□ -0.06
VPS39-210ENST00000568357 FOXJ2Q9P0K8 574 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 KLHL3Q9UH77 587 aa14.7□□□□□ -0.06
VPS39-210ENST00000568357 ZFC3H1O60293 1989 aaKnown RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 KLK10O43240 276 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 OR1I1O60431 355 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 AP2A2O94973 939 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 C9P02748 559 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 MTHFD1P11586 935 aaKnown RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 AMD1P17707 334 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 TPSB2P20231 275 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 MGAT1P26572 445 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 PDHA2P29803 388 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 NSG1P42857 185 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 MAGEA6P43360 314 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 LEPRP48357 1165 aaKnown RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 CDK16Q00536 496 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 CLN3Q13286 438 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 SEMA3AQ14563 771 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 KCNJ11Q14654 390 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 TPSAB1Q15661 275 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 ANKRD22Q5VYY1 191 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 DUS1LQ6P1R4 473 aaKnown RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 LRRC8BQ6P9F7 803 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 GPR155Q7Z3F1 870 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 PLXDC1Q8IUK5 500 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 HM13Q8TCT9 377 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 SGSM3Q96HU1 749 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 RMDN2Q96LZ7 410 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 C12orf66Q96MD2 445 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 DPH1Q9BZG8 443 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 IL22Q9GZX6 179 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 COG4Q9H9E3 785 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 TREX1Q9NSU2 369 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 BFARQ9NZS9 450 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 ACSL6Q9UKU0 697 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 SSUH2Q9Y2M2 353 aa14.69□□□□□ -0.06
VPS39-210ENST00000568357 ZNF106Q9H2Y7 1883 aaKnown RBP14.69□□□□□ -0.06
VPS39-210ENST00000568357 MN1Q10571 1320 aaPredicted RBP14.68□□□□□ -0.06
VPS39-210ENST00000568357 TEX51A0A1B0GUA7 166 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 EFCAB7A8K855 629 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 CES2O00748 559 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 CAPN5O15484 640 aaPredicted RBP14.68□□□□□ -0.06
VPS39-210ENST00000568357 KIF1CO43896 1103 aaKnown RBP14.68□□□□□ -0.06
VPS39-210ENST00000568357 AVILO75366 819 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 NMBRP28336 390 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 CAPZBP47756 277 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 GNG11P61952 73 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 ITIH4Q14624 930 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 TGIF1Q15583 401 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 AFTPHQ6ULP2 937 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 CES3Q6UWW8 571 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 PACS1Q6VY07 963 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 LDB1Q86U70 411 aaPredicted RBP14.68□□□□□ -0.06
VPS39-210ENST00000568357 ZFAND4Q86XD8 727 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 BMPERQ8N8U9 685 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 CPT1BQ92523 772 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 PEX13Q92968 403 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 ART4Q93070 314 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 C9orf72Q96LT7 481 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 TGM7Q96PF1 710 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 TAAR9Q96RI9 348 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 KIFC1Q9BW19 673 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 OR52A5Q9H2C5 316 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 SYBUQ9NX95 663 aa14.68□□□□□ -0.06
VPS39-210ENST00000568357 MARCH4Q9P2E8 410 aaPredicted RBP14.68□□□□□ -0.06
VPS39-210ENST00000568357 ATMQ13315 3056 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 B4E171 279 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 AP3B1O00203 1094 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 PHF2O75151 1096 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 SLC35G4P0C7Q5 338 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 TSPAN7P41732 249 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 PREPP48147 710 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 PPP1CAP62136 330 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms