RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 SLC39A1Q9NY26 324 aa11.56□□□□□ -0.56
HDAC4-216ENST00000544989 ANAPC5Q9UJX4 755 aa11.56□□□□□ -0.56
HDAC4-216ENST00000544989 WDR37Q9Y2I8 494 aa11.56□□□□□ -0.56
HDAC4-216ENST00000544989 SSUH2Q9Y2M2 353 aa11.56□□□□□ -0.56
HDAC4-216ENST00000544989 HECTD1Q9ULT8 2610 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PRAMEF33A0A0G2JMD5 474 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PMS2P1A4D2B8 440 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 EFCAB7A8K855 629 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MATN2O00339 956 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 LIN7AO14910 233 aaPredicted RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PFDN6O15212 129 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PRAMEF10O60809 474 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 OR56A5P0C7T3 313 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 FGF3P11487 239 aaPredicted RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 ETS1P14921 441 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CA5AP35218 305 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MC2RQ01718 297 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CLN3Q13286 438 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 KRT33BQ14525 404 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PLCL1Q15111 1095 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 DBN1Q16643 649 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CCDC38Q502W7 563 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 FASTKD1Q53R41 847 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 SNAP47Q5SQN1 464 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 LRRC8BQ6P9F7 803 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 FAM83HQ6ZRV2 1179 aaPredicted RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 REXO1L1PQ8IX06 675 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CFAP206Q8IYR0 622 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CARFQ8N187 725 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MPP5Q8N3R9 675 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PRELID2Q8N945 189 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 LSM14AQ8ND56 463 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 OR13J1Q8NGT2 312 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 OR4L1Q8NH43 312 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 ACTRT1Q8TDG2 376 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 SNRNP27Q8WVK2 155 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 HDAC10Q969S8 669 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MAGOHBQ96A72 148 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 C9orf72Q96LT7 481 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 C12orf66Q96MD2 445 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 UBL7Q96S82 380 aaPredicted RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 CD180Q99467 661 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 WWP1Q9H0M0 922 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 FAM96AQ9H5X1 160 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 KIR3DX1Q9H7L2 352 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MVB12BQ9H7P6 319 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 MRM3Q9HC36 420 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 IMP3Q9NV31 184 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PIH1D1Q9NWS0 290 aaKnown RBP11.55□□□□□ -0.56
HDAC4-216ENST00000544989 SMARCAL1Q9NZC9 954 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 TMEM9Q9P0T7 183 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 PSMD13Q9UNM6 376 aa11.55□□□□□ -0.56
HDAC4-216ENST00000544989 C9orf172C9J069 976 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CCL22O00626 93 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CAPN5O15484 640 aaPredicted RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 SGTAO43765 313 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 KDM1AO60341 852 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 RASSF9O75901 435 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ZSCAN5DPP0CG00 497 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CCL4P13236 92 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 TYRP1P17643 537 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 TCP1P17987 556 aaKnown RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 MPSTP25325 297 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 FOXN2P32314 431 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ETV5P41161 510 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 MAGEA6P43360 314 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 KCNJ1P48048 391 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 FNTAP49354 379 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 TTPAP49638 278 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CXADRP78310 365 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 RHDQ02161 417 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 VAC14Q08AM6 782 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CYP1B1Q16678 543 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CAPRIN2Q6IMN6 1127 aaKnown RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ARMC6Q6NXE6 501 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CCDC81Q6ZN84 652 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 OOSP2Q86WS3 158 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 KMT5CQ86Y97 462 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 PIANPQ8IYJ0 282 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ZSCAN1Q8NBB4 408 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 GLIS1Q8NBF1 620 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 OR6P1Q8NGX9 317 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 UBXN4Q92575 508 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ART4Q93070 314 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 TGM7Q96PF1 710 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 INSM2Q96T92 566 aaPredicted RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 TRIT1Q9H3H1 467 aaKnown RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 ZNF768Q9H5H4 540 aaKnown RBP11.54□□□□□ -0.56
HDAC4-216ENST00000544989 COG4Q9H9E3 785 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 OGFRQ9NZT2 677 aa11.54□□□□□ -0.56
HDAC4-216ENST00000544989 CCDC162PA2VCL2 907 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 A8MU76 341 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 TK2O00142 265 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 POLR1CO15160 346 aaPredicted RBP11.53□□□□□ -0.56
HDAC4-216ENST00000544989 GOT2P00505 430 aaKnown RBP11.53□□□□□ -0.56
HDAC4-216ENST00000544989 KRT14P02533 472 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 POLBP06746 335 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 PAMP19021 973 aa11.53□□□□□ -0.56
HDAC4-216ENST00000544989 CDKN1CP49918 316 aaPredicted RBP11.53□□□□□ -0.56
HDAC4-216ENST00000544989 ARSDP51689 593 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms