RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 DLGAP3O95886 979 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 EPOP01588 193 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 FUCA1P04066 466 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 UQCRHP07919 91 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 HOXC4P09017 264 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 GRNP28799 593 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 STAT5AP42229 794 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 SESN2P58004 480 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 KIAA1024LP59773 190 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 VSNL1P62760 191 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 OLIG2Q13516 323 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 NAA30Q147X3 362 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 SLC1A5Q15758 541 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 BBS9Q3SYG4 887 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 KCTD11Q693B1 232 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 WDR93Q6P2C0 686 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 BRAT1Q6PJG6 821 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 USP45Q70EL2 814 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 BLOC1S5Q8TDH9 187 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 SERPINB12Q96P63 405 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 CTRCQ99895 268 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 CYP4F12Q9HCS2 524 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 FBXO8Q9NRD0 319 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 ARGLU1Q9NWB6 273 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 PIH1D1Q9NWS0 290 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 ERRFI1Q9UJM3 462 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 PHTF1Q9UMS5 762 aa12.31□□□□□ -0.44
CLSTN3-208ENST00000538933 MED13LQ71F56 2210 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 LOC285095A0A1B0GVY8 99 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 CTIFO43310 598 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SLC4A1P02730 911 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 MLNP12872 115 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 CTPS1P17812 591 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 TRIM23P36406 574 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 CHRNA4P43681 627 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 NPY2RP49146 381 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 LIG3P49916 1009 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SUOXP51687 545 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 RPL26P61254 145 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 PDIA2Q13087 525 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 MRPL49Q13405 166 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SIRPB2Q5JXA9 342 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 DENND2CQ68D51 928 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 ERAP2Q6P179 960 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 TMEM71Q6P5X7 295 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 ZDHHC24Q6UX98 284 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 ARHGAP22Q7Z5H3 698 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 FAM129CQ86XR2 697 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 KLHDC8BQ8IXV7 354 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 GSPT2Q8IYD1 628 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 NRSN1Q8IZ57 195 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 EIF1ADQ8N9N8 165 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 PPHLN1Q8NEY8 458 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 ZDHHC1Q8WTX9 485 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 PATE1Q8WXA2 126 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 TADA1Q96BN2 335 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SRPK1Q96SB4 655 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 LGR4Q9BXB1 951 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 APMAPQ9HDC9 416 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SAYSD1Q9NPB0 183 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 RPL26L1Q9UNX3 145 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 MAD1L1Q9Y6D9 718 aa12.3□□□□□ -0.44
CLSTN3-208ENST00000538933 SDR42E2A6NKP2 422 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 ANKRD66B4E2M5 251 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 TRAFD1O14545 582 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 EIF3HO15372 352 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 HTRA2O43464 458 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 RFPL1O75677 317 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 STK17BO94768 372 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PCCBP05166 539 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PDHA1P08559 390 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 CYP2A6P11509 494 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PRF1P14222 555 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 TPH1P17752 444 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 MGAT1P26572 445 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 ADRA1AP35348 466 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 GRIA1P42261 906 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PMS2P54278 862 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 DHX9Q08211 1270 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 LAMB3Q13751 1172 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 POU6F1Q14863 301 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 SLMAPQ14BN4 828 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 KRTAP21-3Q3LHN1 58 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 NADK2Q4G0N4 442 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 RANBP10Q6VN20 620 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 GLT6D1Q7Z4J2 308 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 TMEM135Q86UB9 458 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 APLFQ8IW19 511 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 ZBED8Q8IZ13 594 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 NAGSQ8N159 534 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PELI3Q8N2H9 469 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 HCAR2Q8TDS4 363 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 DPYSL5Q9BPU6 564 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 GPR63Q9BZJ6 419 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 IL22Q9GZX6 179 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 TRIT1Q9H3H1 467 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 PCDH12Q9NPG4 1184 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 ZDHHC18Q9NUE0 388 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 HACD3Q9P035 362 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms