RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ACADVLP49748 655 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CLNS1AP54105 237 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 PTSQ03393 145 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 DPTQ07507 201 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 NR6A1Q15406 480 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 VITQ6UXI7 678 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 VPS37AQ8NEZ2 397 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ZNF483Q8TF39 744 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 MRGPRX3Q96LB0 322 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CATSPER2Q96P56 530 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 THTPAQ9BU02 230 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 TBC1D10AQ9BXI6 508 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 PPM1HQ9ULR3 514 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CDC7O00311 574 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 RNASEH2AO75792 299 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 CCNDBP1O95273 360 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 SERPINB1P30740 379 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 PBX2P40425 430 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 NUDT2P50583 147 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CLCN7P51798 805 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ELF3P78545 371 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 TMEM115Q12893 351 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 CYP2A13Q16696 494 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 AGKQ53H12 422 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 THEMIS2Q5TEJ8 643 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 PARS2Q7L3T8 475 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 TSPAN33Q86UF1 283 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ANKRD49Q8WVL7 239 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 DLG3Q92796 817 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ROPN1LQ96C74 230 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 HOPXQ9BPY8 73 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 WRAP53Q9BUR4 548 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 SHCBP1LQ9BZQ2 653 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 MUC13Q9H3R2 512 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 IPPKQ9H8X2 491 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 PREBQ9HCU5 417 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ARL8BQ9NVJ2 186 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ADGRE2Q9UHX3 823 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ZDHHC2Q9UIJ5 367 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 MTF2Q9Y483 593 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 TARM1B6A8C7 271 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 TOR1BO14657 336 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 KMOO15229 486 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 KLK8O60259 260 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 RECQL5O94762 991 aaPredicted RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 CHRNGP07510 517 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 EPHA3P29320 983 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 HNF4AP41235 474 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 CSRP3P50461 194 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 NAA25Q14CX7 972 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 IL27RAQ6UWB1 636 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 LRRTM4Q86VH4 590 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 KRT78Q8N1N4 520 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 AADATQ8N5Z0 425 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 GLB1L3Q8NCI6 653 aaPredicted RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 RAD51AP1Q96B01 352 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ACOX2Q99424 681 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 MIPEPQ99797 713 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 KCNK13Q9HB14 408 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 TRPV5Q9NQA5 729 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ACSL5Q9ULC5 683 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 PRR5-ARHGAP8B1AHC4 643 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ANKRD65E5RJM6 399 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 AIM2O14862 343 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 UGDHO60701 494 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 TOP3BO95985 862 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 SLC2A4P14672 509 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ARHGAP8P85298 464 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 IRF8Q02556 426 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 LRRC74AQ0VAA2 488 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ASTLQ6HA08 431 aaPredicted RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 ZFP1Q6P2D0 407 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 UNC5DQ6UXZ4 953 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 DET1Q7L5Y6 550 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 PGBD3Q8N328 593 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 KIF2BQ8N4N8 673 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 OR6Y1Q8NGX8 325 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 FAM174AQ8TBP5 190 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 RSRC1Q96IZ7 334 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 QRFPRQ96P65 431 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 HAUS8Q9BT25 410 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 CCDC106Q9BWC9 280 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 WDR26Q9H7D7 661 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ARMCX1Q9P291 453 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 CD84Q9UIB8 345 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 CROTQ9UKG9 612 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 AGAP14A8MT82 685 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 DNAJA2O60884 412 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SLC35G4P0C7Q5 338 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 PRPS2P11908 318 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 C6P13671 934 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 HOXB2P14652 356 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 NDUFS1P28331 727 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ETV3P41162 512 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 DLG1Q12959 904 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 OR4D1Q15615 310 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 BCL7AQ4VC05 210 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SAMD4BQ5PRF9 694 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 KANK2Q63ZY3 851 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms